Non-Coding RNA Search

Ova1-OVRM10063G11

Sequence:


               
               TGAACTGTATCTCCCGTGATCTGGAGCCCTAGGGGTCTAAACCAAGGCTCCAGGGCACCG
GGGATATTTTGTAATTTCTCCTAGTTCAAGTCTGTGCCTGGAAGGGGTATGGGAAGTGAA
CAGGTGGTTTTATACATAGCGTCAACAAGGAGAGTTTGTTTTTTGGAACCATGGTTTATA
GTATCAATACTTCAAAGTTCTAAGGAGCCCCTGGGAAACTAATGTGGAACAGATTAGGGA
GAGGATGGGAATAGGCTATGAAAGCCTTCAGACCACAATGCAGTTCTCACACCTTTGAGG
AGAAAAGTGAAGAGAAAGGAAGAGTTGGGTGGAAAAACCCTCAGATTACAGCACAGTTCT
GAGAAGCTTCCGCCAGACCTAACTTCTGACCCCAAAAGTTGTCCAGGAAAGGAACCCTGT
GGAGGGCAGGAATGGGCCAGCACTACACCCTTGGTGTATATCAGTGGCTAGAGGCATCAT
GGGGAGGGGAGTGAGAGAGCACGGCCTCAGCATGAAGGCTGGTGGACCCAGAAGGGCAGC
AGCTGGGGCTGTCAGTCAGCTAGACTTCCCACAGCTGGTTAGTTGTCTTGAAGAGGATTT
TGGCAGCATGGTTTCATGGGTGCTGCAGACCCTAATTGCATACTTTTNGGGGAAAACTGT
GGCATATGAAGGTAAGCCCTTAAGAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAACTGTATCTCCCGTGATCTGGAGCCCTAGGGGTCTAAACCAAGGCTCCAGGGCACCG
GGGATATTTTGTAATTTCTCCTAGTTCAAGTCTGTGCCTGGAAGGGGTATGGGAAGTGAA
CAGGTGGTTTTATACATAGCGTCAACAAGGAGAGTTTGTTTTTTGGAACCATGGTTTATA
GTATCAATACTTCAAAGTTCTAAGGAGCCCCTGGGAAACTAATGTGGAACAGATTAGGGA
GAGGATGGGAATAGGCTATGAAAGCCTTCAGACCACAATGCAGTTCTCACACCTTTGAGG
AGAAAAGTGAAGAGAAAGGAAGAGTTGGGTGGAAAAACCCTCAGATTACAGCACAGTTCT
GAGAAGCTTCCGCCAGACCTAACTTCTGACCCCAAAAGTTGTCCAGGAAAGGAACCCTGT
GGAGGGCAGGAATGGGCCAGCACTACACCCTTGGTGTATATCAGTGGCTAGAGGCATCAT
GGGGAGGGGAGTGAGAGAGCACGGCCTCAGCATGAAGGCTGGTGGACCCAGAAGGGCAGC
AGCTGGGGCTGTCAGTCAGCTAGACTTCCCACAGCTGGTTAGTTGTCTTGAAGAGGATTT
TGGCAGCATGGTTTCATGGGTGCTGCAGACCCTAATTGCATACTTTTNGGGGAAAACTGT
GGCATATGAAGGTAAGCCCTTAAGAATTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               277-432, - strand, RNAz p=0.938097
               

               
               472-588, + strand, RNAz p=0.990594

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               277-432, - strand, RNAz p=0.938097
               

               
               472-588, + strand, RNAz p=0.990594

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               4-220, gnl|bosTau2|chr14 (37740730-37740514)
               

               
               4-220, gnl|Hg17|chr8 (102262450-102262208)
               


               
               238-687, gnl|bosTau2|chr14 (37740451-37740020)
               

               
               238-687, gnl|Hg17|chr8 (102262150-102261725)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-220, gnl|bosTau2|chr14 (37740730-37740514)
               

               
               4-220, gnl|Hg17|chr8 (102262450-102262208)
               


               
               238-687, gnl|bosTau2|chr14 (37740451-37740020)
               

               
               238-687, gnl|Hg17|chr8 (102262150-102261725)

	277-432, - strand, RNAz p=0.938097
	472-588, + strand, RNAz p=0.990594

	4-220, gnl\|bosTau2\|chr14 (37740730-37740514)
	4-220, gnl\|Hg17\|chr8 (102262450-102262208)

	238-687, gnl\|bosTau2\|chr14 (37740451-37740020)
	238-687, gnl\|Hg17\|chr8 (102262150-102261725)