Non-Coding RNA Search

Ova1-OVRM10065A06

Sequence:


               
               AGAACATATGCACACAAGCAGAATCTGGCAGAAAACGTGGACTTAATGAATCGCATTATT
TGAACCTCCTATTTGAAATGGACTGGTGAAAAAGGAACAGGAGAGAGATGCACAGAAATG
GTTCTTACTTCTCAAAGGCCTTGTGTTTTTTTTGAAAAGGAAGAAGTGGCAAGCAGCACT
CCTTTCAAATACACAAACAGTATCTGAGGGAGCACCCTCCTCTTCCTCCTATTTGTTCTT
AAAAAAAAAGAACAAATGTTAAGCCTTAAGACGGGCTTCCTCATCTCATATGACTGAGTA
AATAAATACAGGGAAAAGGAGTTTGCAAAGCACCTTTACTGTTTACACTTAGTGCATTAA
TGGAAAGATGCCTAATTAGCCATGTGATACTATTGGTCGCTCTGTTTGAAAGGACCCAGG
TAAATCATTGTAACCTGGCTGACATTGGCTATCGTTGTTTGGTTTTCATTTTGGTTTTGT
AACAGAGACTTAGAAATAGAGTATTTCTTTTCTTCCTCCCCCTTTTCCTCCCTCCTTCTC
TCCTGCCTTCTCTCCTCCTCTCCCTTCCTTCCTTCCAAATACTTTTTCTTACCATCAAAA
AAGAAAGAATTCTGGACCTACAGTCCCAAGATCTTAGCATGTCCTGGGTTGTGCCTGAGA
GG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACATATGCACACAAGCAGAATCTGGCAGAAAACGTGGACTTAATGAATCGCATTATT
TGAACCTCCTATTTGAAATGGACTGGTGAAAAAGGAACAGGAGAGAGATGCACAGAAATG
GTTCTTACTTCTCAAAGGCCTTGTGTTTTTTTTGAAAAGGAAGAAGTGGCAAGCAGCACT
CCTTTCAAATACACAAACAGTATCTGAGGGAGCACCCTCCTCTTCCTCCTATTTGTTCTT
AAAAAAAAAGAACAAATGTTAAGCCTTAAGACGGGCTTCCTCATCTCATATGACTGAGTA
AATAAATACAGGGAAAAGGAGTTTGCAAAGCACCTTTACTGTTTACACTTAGTGCATTAA
TGGAAAGATGCCTAATTAGCCATGTGATACTATTGGTCGCTCTGTTTGAAAGGACCCAGG
TAAATCATTGTAACCTGGCTGACATTGGCTATCGTTGTTTGGTTTTCATTTTGGTTTTGT
AACAGAGACTTAGAAATAGAGTATTTCTTTTCTTCCTCCCCCTTTTCCTCCCTCCTTCTC
TCCTGCCTTCTCTCCTCCTCTCCCTTCCTTCCTTCCAAATACTTTTTCTTACCATCAAAA
AAGAAAGAATTCTGGACCTACAGTCCCAAGATCTTAGCATGTCCTGGGTTGTGCCTGAGA
GG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               152-267, - strand, RNAz p=0.998753

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-267, - strand, RNAz p=0.998753

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-609, gnl|bosTau2|chr20 (11853150-11853747)
               

               
               1-609, gnl|Hg17|chr5 (58458288-58457662)
               

               
               1-609, gnl|Mm7|chr13 (106970474-106971017)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-609, gnl|bosTau2|chr20 (11853150-11853747)
               

               
               1-609, gnl|Hg17|chr5 (58458288-58457662)
               

               
               1-609, gnl|Mm7|chr13 (106970474-106971017)

	1-609, gnl\|bosTau2\|chr20 (11853150-11853747)
	1-609, gnl\|Hg17\|chr5 (58458288-58457662)
	1-609, gnl\|Mm7\|chr13 (106970474-106971017)