Non-Coding RNA Search

Ova1-OVRM10065F10

Sequence:


               
               TTTTCTTTGCACAAGTCTCAGTGGAATAAGGTTGCCGAGTCGAGCCACCATTTCCACTTG
AGCAAATATGGGTGCCCAGTTTTCCAAAAGCAAGGGTTTTATGGGGTGATGGGCTGAATT
AAGGAAGCAATAACCCCACTCTTTCCTTAGCCCTTCTTGTTGACTAAGGCAAGAGTTTAT
AAAAGTGGCTTCATTCATTCCCCTCTGCCTGGTGTTCTTATGTAAACCAGAAACAGGGAG
TTTGGAACAGCATTGAACGGTAGAGGTCGGTTTTCATTAAATATTCAACACCTGCCCTTA
ATGTTACAACCTAGTGTTTTGCCAACCCAGGTTCTCTCTGTCCCTGGGATTTCCTGTGTT
GAGTGAGAGACTGTGACAGAGGTCTAAACATTAAAACATAAAACAAACCAAAAACATAAA
GCGATGAGTTACAGAAATACATATGTGCGTCAGAATATTCAAGAAAACCGAGTTTGGATG
TCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTCTTTGCACAAGTCTCAGTGGAATAAGGTTGCCGAGTCGAGCCACCATTTCCACTTG
AGCAAATATGGGTGCCCAGTTTTCCAAAAGCAAGGGTTTTATGGGGTGATGGGCTGAATT
AAGGAAGCAATAACCCCACTCTTTCCTTAGCCCTTCTTGTTGACTAAGGCAAGAGTTTAT
AAAAGTGGCTTCATTCATTCCCCTCTGCCTGGTGTTCTTATGTAAACCAGAAACAGGGAG
TTTGGAACAGCATTGAACGGTAGAGGTCGGTTTTCATTAAATATTCAACACCTGCCCTTA
ATGTTACAACCTAGTGTTTTGCCAACCCAGGTTCTCTCTGTCCCTGGGATTTCCTGTGTT
GAGTGAGAGACTGTGACAGAGGTCTAAACATTAAAACATAAAACAAACCAAAAACATAAA
GCGATGAGTTACAGAAATACATATGTGCGTCAGAATATTCAAGAAAACCGAGTTTGGATG
TCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               78-187, + strand, RNAz p=0.652985

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-187, + strand, RNAz p=0.652985

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               3-476, gnl|bosTau2|chr14 (27732334-27732789)
               

               
               3-476, gnl|canFam2|chr13 (20326628-20327066)
               

               
               3-476, gnl|dasNov1|scaffold_368 (172997-172450)
               

               
               3-476, gnl|hg17|chr8 (119017077-119017523)
               

               
               3-476, gnl|Hg17|chr8 (119017562-119017118)
               

               
               3-476, gnl|loxAfr1|scaffold_463 (62292-61836)
               

               
               3-476, gnl|oryCun1|scaffold_210927 (263469-263881)
               

               
               3-476, gnl|panTro1|chr7 (121745571-121746017)
               

               
               3-476, gnl|rheMac2|chr8 (120488981-120489436)
               

               
               3-476, gnl|rn3|chr7 (89534348-89534797)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-476, gnl|bosTau2|chr14 (27732334-27732789)
               

               
               3-476, gnl|canFam2|chr13 (20326628-20327066)
               

               
               3-476, gnl|dasNov1|scaffold_368 (172997-172450)
               

               
               3-476, gnl|hg17|chr8 (119017077-119017523)
               

               
               3-476, gnl|Hg17|chr8 (119017562-119017118)
               

               
               3-476, gnl|loxAfr1|scaffold_463 (62292-61836)
               

               
               3-476, gnl|oryCun1|scaffold_210927 (263469-263881)
               

               
               3-476, gnl|panTro1|chr7 (121745571-121746017)
               

               
               3-476, gnl|rheMac2|chr8 (120488981-120489436)
               

               
               3-476, gnl|rn3|chr7 (89534348-89534797)

	3-476, gnl\|bosTau2\|chr14 (27732334-27732789)
	3-476, gnl\|canFam2\|chr13 (20326628-20327066)
	3-476, gnl\|dasNov1\|scaffold_368 (172997-172450)
	3-476, gnl\|hg17\|chr8 (119017077-119017523)
	3-476, gnl\|Hg17\|chr8 (119017562-119017118)
	3-476, gnl\|loxAfr1\|scaffold_463 (62292-61836)
	3-476, gnl\|oryCun1\|scaffold_210927 (263469-263881)
	3-476, gnl\|panTro1\|chr7 (121745571-121746017)
	3-476, gnl\|rheMac2\|chr8 (120488981-120489436)
	3-476, gnl\|rn3\|chr7 (89534348-89534797)