Non-Coding RNA Search

Ova1-OVRM10066B02

Sequence:


               
               AAGCCTTGCTGCTCGATGAGTGAGTTTGCATATGGACAGTATTGCTTTTTGGCTCCAACC
TAGTTTTCTTTCATTCCCATGTCTCATCTTTTATGCAGCTGCAGAGAGCAGGCTGGGAAA
GCAGAATGAAAGCTTCAAACAGATTTGCACTTGAATAAAAGAAAGAATGATTTCTCTTAG
AGCACAGACCCAATTGAGGAGGAAGCTGTTTGCTTTTTCACTTTCCGAGTAAGGACTGTT
TGCTTTTTCCCCTTCAATTGTGATAAAAAGGGGAAAGAGCTAATAAAGTAGTTAGACCTG
CTAGTTATATCTGATAGAGAATTTTCAAATGTGCTTAATAAGGCTTCTCCTATGATTATA
AAAGAAGTAAATAGTTGGAGGGCAAAAGTCGAAATTCAGTTGAGGTTTCAGAATCAGTTG
AATATGAAGTGGTTTGAGTGCTTGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCTTGCTGCTCGATGAGTGAGTTTGCATATGGACAGTATTGCTTTTTGGCTCCAACC
TAGTTTTCTTTCATTCCCATGTCTCATCTTTTATGCAGCTGCAGAGAGCAGGCTGGGAAA
GCAGAATGAAAGCTTCAAACAGATTTGCACTTGAATAAAAGAAAGAATGATTTCTCTTAG
AGCACAGACCCAATTGAGGAGGAAGCTGTTTGCTTTTTCACTTTCCGAGTAAGGACTGTT
TGCTTTTTCCCCTTCAATTGTGATAAAAAGGGGAAAGAGCTAATAAAGTAGTTAGACCTG
CTAGTTATATCTGATAGAGAATTTTCAAATGTGCTTAATAAGGCTTCTCCTATGATTATA
AAAGAAGTAAATAGTTGGAGGGCAAAAGTCGAAATTCAGTTGAGGTTTCAGAATCAGTTG
AATATGAAGTGGTTTGAGTGCTTGGAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               111-304, - strand, RNAz p=0.960177
               

               
               329-447, - strand, RNAz p=0.603292

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-304, - strand, RNAz p=0.960177
               

               
               329-447, - strand, RNAz p=0.603292

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-447, gnl|bosTau2|chr10 (53873041-53873491)
               

               
               1-447, gnl|Hg17|chr14 (67478252-67478695)
               

               
               1-447, gnl|Mm7|chr12 (77316764-77317199)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-447, gnl|bosTau2|chr10 (53873041-53873491)
               

               
               1-447, gnl|Hg17|chr14 (67478252-67478695)
               

               
               1-447, gnl|Mm7|chr12 (77316764-77317199)

	111-304, - strand, RNAz p=0.960177
	329-447, - strand, RNAz p=0.603292

	1-447, gnl\|bosTau2\|chr10 (53873041-53873491)
	1-447, gnl\|Hg17\|chr14 (67478252-67478695)
	1-447, gnl\|Mm7\|chr12 (77316764-77317199)