Non-Coding RNA Search

Ova1-OVRM10068G05

Sequence:


               
               AAACCCCAAATTGCTCCCGGTGCCGGCGCCTGAGCCCGCGGGCCTGGACGGGAAGATGAT
TCGGGCCACGGGAGGTTTTGGCGGAGGCGTAGACGCTGTGGAGCCTCCGGAGGAGGAGGA
GGAGAAGGAGACGCCGCCGCCGCCTCGGCAGCTCCTCCGGCGTTACCTCACGGGAGCCGG
GGGGCAGCTGGAGCCTGGGCTGTGCTACTGTCCGCTCCCCGCCTGCCAGCCCCGCGCTCC
GCCGCCCTTCTCAGCCCCGCTCTCGGACGCCTGCCCACCGTACGCGGGCTCCAAGCACCG
CAGCTCAGAGATGGCAGATGCCTGCGCGGCGCGGCACGAAGGCATGACCAACGGGGACTC
GGGCTTTCTGCCGGGCCAGGACTGTCGCGACCTGGCCAGCGCTGGCGGCCGGGAGCCGCG
CCACAGCTGCCTCCGCCTGGAGGGGCCTGGAGACGTGGGCGCGGACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACCCCAAATTGCTCCCGGTGCCGGCGCCTGAGCCCGCGGGCCTGGACGGGAAGATGAT
TCGGGCCACGGGAGGTTTTGGCGGAGGCGTAGACGCTGTGGAGCCTCCGGAGGAGGAGGA
GGAGAAGGAGACGCCGCCGCCGCCTCGGCAGCTCCTCCGGCGTTACCTCACGGGAGCCGG
GGGGCAGCTGGAGCCTGGGCTGTGCTACTGTCCGCTCCCCGCCTGCCAGCCCCGCGCTCC
GCCGCCCTTCTCAGCCCCGCTCTCGGACGCCTGCCCACCGTACGCGGGCTCCAAGCACCG
CAGCTCAGAGATGGCAGATGCCTGCGCGGCGCGGCACGAAGGCATGACCAACGGGGACTC
GGGCTTTCTGCCGGGCCAGGACTGTCGCGACCTGGCCAGCGCTGGCGGCCGGGAGCCGCG
CCACAGCTGCCTCCGCCTGGAGGGGCCTGGAGACGTGGGCGCGGACGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-184, + strand, RNAz p=0.961084

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-184, + strand, RNAz p=0.961084

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               75-198, - strand, RNAmicro p=0.997586
               

               
               71-182, + strand, RNAmicro p=0.978473

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               75-198, - strand, RNAmicro p=0.997586
               

               
               71-182, + strand, RNAmicro p=0.978473

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-468, gnl|bosTau2|chr18 (24537191-24537658)
               

               
               1-468, gnl|Hg17|chr10 (96152399-96152911)
               

               
               1-468, gnl|Mm7|chr19 (38537429-38537809)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-468, gnl|bosTau2|chr18 (24537191-24537658)
               

               
               1-468, gnl|Hg17|chr10 (96152399-96152911)
               

               
               1-468, gnl|Mm7|chr19 (38537429-38537809)

	75-198, - strand, RNAmicro p=0.997586
	71-182, + strand, RNAmicro p=0.978473

	1-468, gnl\|bosTau2\|chr18 (24537191-24537658)
	1-468, gnl\|Hg17\|chr10 (96152399-96152911)
	1-468, gnl\|Mm7\|chr19 (38537429-38537809)