Non-Coding RNA Search

Ova1-OVRM10069D02

Sequence:


               
               ATAAAGCCTATGTGACCCACAGGGAAGGGCTACATTGTATTATGTCACATGGACCATCAG
AGGCTTTTAGTTCTTATCCTCAGAACATGATAAAAAAGGGGTCTCTCCCTCTCTCCATGT
TTATTGAATGAAATAACACATAGGTACTTTAATTCCGGTTTTAAGGTCTCCCCATTCTGT
TAGCATCCCTGCTTTTCCAAAGTGACCTGCTTTTTTTCAGTATTATTTCCTCCTCATGCA
GTGTTCTTTTCTCTGTTCAGTGCAGCTTCGTTCATGCTTCAATTCTGTGAGTCAGAACTT
GTTTTTGCTTTTCTCATGACTCTTTCATAACTCCCTGTATCATAATTTCTGTTCATATGT
GTCCCCTCTTTAGATCCTAAGGTCTCTGGGATCACAATCTCTACCTGACATATACTTGTA
CCTCTGCCATGGTGTTAATCACCCCACCCCAGTTCTTTCACCCTGGCACAGAAATAAGGG
TTTATTAAATAGAGGAGAGAATGGCTGGAAGAAGCATTTGGTGTATTTTTATTCTAACAT
AAATCTGTACTACTAAATATCTGGAAGCATGTCTTAAAATTCCATTATGGGCATGTTAAT
ATGAAAGAAGTAAATTCATTCAATAAGTAAAAGAAAAAGTTTGAGAGAAGAGTAAGATTA
GAGAAGAAAATTGGAGAGGAAACAAATCGGAAGTTTGAAGACCAAGCTGAAAGAATANGA
TGGCAGAGAAAGATAACCATATNAAGATATCAGATATCCTTCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAAGCCTATGTGACCCACAGGGAAGGGCTACATTGTATTATGTCACATGGACCATCAG
AGGCTTTTAGTTCTTATCCTCAGAACATGATAAAAAAGGGGTCTCTCCCTCTCTCCATGT
TTATTGAATGAAATAACACATAGGTACTTTAATTCCGGTTTTAAGGTCTCCCCATTCTGT
TAGCATCCCTGCTTTTCCAAAGTGACCTGCTTTTTTTCAGTATTATTTCCTCCTCATGCA
GTGTTCTTTTCTCTGTTCAGTGCAGCTTCGTTCATGCTTCAATTCTGTGAGTCAGAACTT
GTTTTTGCTTTTCTCATGACTCTTTCATAACTCCCTGTATCATAATTTCTGTTCATATGT
GTCCCCTCTTTAGATCCTAAGGTCTCTGGGATCACAATCTCTACCTGACATATACTTGTA
CCTCTGCCATGGTGTTAATCACCCCACCCCAGTTCTTTCACCCTGGCACAGAAATAAGGG
TTTATTAAATAGAGGAGAGAATGGCTGGAAGAAGCATTTGGTGTATTTTTATTCTAACAT
AAATCTGTACTACTAAATATCTGGAAGCATGTCTTAAAATTCCATTATGGGCATGTTAAT
ATGAAAGAAGTAAATTCATTCAATAAGTAAAAGAAAAAGTTTGAGAGAAGAGTAAGATTA
GAGAAGAAAATTGGAGAGGAAACAAATCGGAAGTTTGAAGACCAAGCTGAAAGAATANGA
TGGCAGAGAAAGATAACCATATNAAGATATCAGATATCCTTCTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               647-765, - strand, RNAz p=0.678239

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               647-765, - strand, RNAz p=0.678239

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               4-442, gnl|bosTau2|chr11 (12942041-12941603)
               

               
               4-442, gnl|Hg17|chr2 (33635183-33635620)
               


               
               458-765, gnl|bosTau2|chr11 (12941606-12941296)
               

               
               458-765, gnl|canFam2|chr17 (29710353-29710584)
               

               
               458-765, gnl|dasNov1|scaffold_618 (79312-79085)
               

               
               458-765, gnl|hg17|chr2 (33635583-33635824)
               

               
               458-765, gnl|Hg17|chr2 (33635617-33636612)
               

               
               458-765, gnl|panTro1|chr12 (34662675-34662916)
               

               
               458-765, gnl|rheMac2|chr13 (33476279-33476513)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-442, gnl|bosTau2|chr11 (12942041-12941603)
               

               
               4-442, gnl|Hg17|chr2 (33635183-33635620)
               


               
               458-765, gnl|bosTau2|chr11 (12941606-12941296)
               

               
               458-765, gnl|canFam2|chr17 (29710353-29710584)
               

               
               458-765, gnl|dasNov1|scaffold_618 (79312-79085)
               

               
               458-765, gnl|hg17|chr2 (33635583-33635824)
               

               
               458-765, gnl|Hg17|chr2 (33635617-33636612)
               

               
               458-765, gnl|panTro1|chr12 (34662675-34662916)
               

               
               458-765, gnl|rheMac2|chr13 (33476279-33476513)

	4-442, gnl\|bosTau2\|chr11 (12942041-12941603)
	4-442, gnl\|Hg17\|chr2 (33635183-33635620)

	458-765, gnl\|bosTau2\|chr11 (12941606-12941296)
	458-765, gnl\|canFam2\|chr17 (29710353-29710584)
	458-765, gnl\|dasNov1\|scaffold_618 (79312-79085)
	458-765, gnl\|hg17\|chr2 (33635583-33635824)
	458-765, gnl\|Hg17\|chr2 (33635617-33636612)
	458-765, gnl\|panTro1\|chr12 (34662675-34662916)
	458-765, gnl\|rheMac2\|chr13 (33476279-33476513)