Non-Coding RNA Search

Ova1-OVRM10080G04

Sequence:


               
               TTTATTATTTTTAATCATTTATCATTTTTTGGAAATGCAAAAATAATGTAAAGAAGGTGA
TGTGTCACAGCATGTCACCAGCTGAAGAACCACTTGGGAGGGAAATCTAATGAACCAGAG
CAAGGGTTCCAGCACACCCACTTCTGAAGTGGACACACGTGCACAAGTGCACAGGGCCAT
GTAGGGCAGGTTGTTGTGACCACACTGTGAAGGCTGAACCCTGGAAACACAATAGGTTCC
TTATTAGGGGACTGATTAGCAAAGCGCCGTTCACTAGACCACGGGCTATTTCACTGCTGG
AACAAAATGGGCAGTGCTACAGTCATtacatttatccagagccatagactgcaccacacc
aagggggaactgggatggagattctggactctgggtgatgacgacgtgtcactacaggtt
tatcagctgtaacaaatgtcccacgctggtgggagatgctggtaacaggggaggccgtgt
gtgtgtaggggcagggtgtctgtggaaaaGACACCCACCGCTGCCGGAAGTCGGTGTAAA
GCAGCCTATTGGGGAATCCTTGGCGGCAGATCCGGATCCCCTCCAGAACCCCATTGCAGC
GCAGCTGGTGTAGCACCAAGAAGGCATCCATGACTCCTGGACGTGGAGGGGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTATTTTTAATCATTTATCATTTTTTGGAAATGCAAAAATAATGTAAAGAAGGTGA
TGTGTCACAGCATGTCACCAGCTGAAGAACCACTTGGGAGGGAAATCTAATGAACCAGAG
CAAGGGTTCCAGCACACCCACTTCTGAAGTGGACACACGTGCACAAGTGCACAGGGCCAT
GTAGGGCAGGTTGTTGTGACCACACTGTGAAGGCTGAACCCTGGAAACACAATAGGTTCC
TTATTAGGGGACTGATTAGCAAAGCGCCGTTCACTAGACCACGGGCTATTTCACTGCTGG
AACAAAATGGGCAGTGCTACAGTCATtacatttatccagagccatagactgcaccacacc
aagggggaactgggatggagattctggactctgggtgatgacgacgtgtcactacaggtt
tatcagctgtaacaaatgtcccacgctggtgggagatgctggtaacaggggaggccgtgt
gtgtgtaggggcagggtgtctgtggaaaaGACACCCACCGCTGCCGGAAGTCGGTGTAAA
GCAGCCTATTGGGGAATCCTTGGCGGCAGATCCGGATCCCCTCCAGAACCCCATTGCAGC
GCAGCTGGTGTAGCACCAAGAAGGCATCCATGACTCCTGGACGTGGAGGGGTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               122-240, - strand, RNAz p=0.753644
               

               
               122-234, - strand, RNAz p=0.988797

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-240, - strand, RNAz p=0.753644
               

               
               122-234, - strand, RNAz p=0.988797

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               122-405, gnl|bosTau2|chr13 (46556762-46557043)
               

               
               122-405, gnl|canFam2|chr24 (27003007-27003147)
               

               
               122-405, gnl|echTel1|scaffold_309010 (187049-187226)
               

               
               122-405, gnl|hg17|chr20 (33043389-33043569)
               

               
               122-405, gnl|loxAfr1|scaffold_18804 (17821-18021)
               

               
               122-405, gnl|mm7|chr2 (155365864-155366045)
               

               
               122-405, gnl|oryCun1|scaffold_207338 (4247-4068)
               

               
               122-405, gnl|panTro1|chr21 (35051498-35051678)
               

               
               122-405, gnl|rheMac2|chr10 (29567737-29567546)
               

               
               122-405, gnl|rn3|chr3 (146035894-146036041)
               


               
               513-651, gnl|bosTau2|chr10 (13728476-13728338)
               

               
               513-651, gnl|Hg17|chr14 (22936006-22936144)
               

               
               513-651, gnl|Mm7|chr14 (49823725-49823861)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-405, gnl|bosTau2|chr13 (46556762-46557043)
               

               
               122-405, gnl|canFam2|chr24 (27003007-27003147)
               

               
               122-405, gnl|echTel1|scaffold_309010 (187049-187226)
               

               
               122-405, gnl|hg17|chr20 (33043389-33043569)
               

               
               122-405, gnl|loxAfr1|scaffold_18804 (17821-18021)
               

               
               122-405, gnl|mm7|chr2 (155365864-155366045)
               

               
               122-405, gnl|oryCun1|scaffold_207338 (4247-4068)
               

               
               122-405, gnl|panTro1|chr21 (35051498-35051678)
               

               
               122-405, gnl|rheMac2|chr10 (29567737-29567546)
               

               
               122-405, gnl|rn3|chr3 (146035894-146036041)
               


               
               513-651, gnl|bosTau2|chr10 (13728476-13728338)
               

               
               513-651, gnl|Hg17|chr14 (22936006-22936144)
               

               
               513-651, gnl|Mm7|chr14 (49823725-49823861)

	122-240, - strand, RNAz p=0.753644
	122-234, - strand, RNAz p=0.988797

	122-405, gnl\|bosTau2\|chr13 (46556762-46557043)
	122-405, gnl\|canFam2\|chr24 (27003007-27003147)
	122-405, gnl\|echTel1\|scaffold_309010 (187049-187226)
	122-405, gnl\|hg17\|chr20 (33043389-33043569)
	122-405, gnl\|loxAfr1\|scaffold_18804 (17821-18021)
	122-405, gnl\|mm7\|chr2 (155365864-155366045)
	122-405, gnl\|oryCun1\|scaffold_207338 (4247-4068)
	122-405, gnl\|panTro1\|chr21 (35051498-35051678)
	122-405, gnl\|rheMac2\|chr10 (29567737-29567546)
	122-405, gnl\|rn3\|chr3 (146035894-146036041)

	513-651, gnl\|bosTau2\|chr10 (13728476-13728338)
	513-651, gnl\|Hg17\|chr14 (22936006-22936144)
	513-651, gnl\|Mm7\|chr14 (49823725-49823861)