Non-Coding RNA Search

Ova1-OVRM10082C06

Sequence:


               
               AAAGAACGGTTTTGATTTTGTTATCGATGAAGATGCTCCGGTCACCGAGAGAGCTAAGTT
GATTTCCTTGCCGACGAGTAAAAACTGGACCTTCGGGCCCCAGGACATAGACGAGCTGAT
CTTCATGCTGAGCGACAGCCCGGGGGTCATGTGCCGCCCTTCCCGAGTCCGGCAGATGTT
CGCCTCCAGAGCCTGTCGGAAGTCTGTGATGATCGGAACTGCCCTCAACACGAGTGAGAT
GAGGAGACTCGTCAGCCACATGGGGGAGATGGACCATCCCTGGAACTGTCCCCACGGAAG
ACCGACCATGAGACACATTGCCAACCTGGATGTCATTTCTCAAAACTGACACTTCTCCTT
TTATGAACGCTTCATTGTACGGCAGATTTCTCGGTTTTGAAAGGCAGGGTTTTAACTTTT
TTTTTTTTTTTTTTTTTTTGGGTTATTTCTAAAAGAAGCCGTTGCTTAAAAATGTTTCAG
ATCCATTTAGAAATGCTCTTGAGAACTTTTTCAAACAGGTCAGAGCATTGCTTGCGACAC
TTTCTGTTCCGCTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGAACGGTTTTGATTTTGTTATCGATGAAGATGCTCCGGTCACCGAGAGAGCTAAGTT
GATTTCCTTGCCGACGAGTAAAAACTGGACCTTCGGGCCCCAGGACATAGACGAGCTGAT
CTTCATGCTGAGCGACAGCCCGGGGGTCATGTGCCGCCCTTCCCGAGTCCGGCAGATGTT
CGCCTCCAGAGCCTGTCGGAAGTCTGTGATGATCGGAACTGCCCTCAACACGAGTGAGAT
GAGGAGACTCGTCAGCCACATGGGGGAGATGGACCATCCCTGGAACTGTCCCCACGGAAG
ACCGACCATGAGACACATTGCCAACCTGGATGTCATTTCTCAAAACTGACACTTCTCCTT
TTATGAACGCTTCATTGTACGGCAGATTTCTCGGTTTTGAAAGGCAGGGTTTTAACTTTT
TTTTTTTTTTTTTTTTTTTGGGTTATTTCTAAAAGAAGCCGTTGCTTAAAAATGTTTCAG
ATCCATTTAGAAATGCTCTTGAGAACTTTTTCAAACAGGTCAGAGCATTGCTTGCGACAC
TTTCTGTTCCGCTCTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37051337|dbj|BAC81643.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37051337|dbj|BAC81643.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               206-324, - strand, RNAz p=0.524395

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-324, - strand, RNAz p=0.524395

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               206-556, gnl|bosTau2|chr25 (35814872-35815218)
               

               
               206-556, gnl|Hg17|chr7 (5786414-5786075)
               

               
               206-556, gnl|Mm7|chr5 (142959045-142959324)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-556, gnl|bosTau2|chr25 (35814872-35815218)
               

               
               206-556, gnl|Hg17|chr7 (5786414-5786075)
               

               
               206-556, gnl|Mm7|chr5 (142959045-142959324)

	206-556, gnl\|bosTau2\|chr25 (35814872-35815218)
	206-556, gnl\|Hg17\|chr7 (5786414-5786075)
	206-556, gnl\|Mm7\|chr5 (142959045-142959324)