Non-Coding RNA Search

Ova1-OVRM10084G12

Sequence:


               
               CAGCACGGGGGGAAGATGTACAGGAAAAAAATAGCACAGCTTTTTATAATAATGCAGAGG
TATTTGAAGTGGTGGAACGTGTGGAAGAGTTAAGACGGAAGTGGCCAGTAGCGTGGGGGA
AGTTGGATGATGGCAGTATCGGTGTGGTGACTCCATATGCTGATCAAGTGTTCAGGATAC
GTGCCGAACTTCGAAAAAAGAGATTGTCTGATGTTAATGTAGAAAGGGTGCTAAATGTTC
AAGGAAAGCAATTCAGAGTTTTGTTTCTTAGCACAGTACGTACAAGGCATACTTGTAAAC
ATAAACAGACACCAATTAAAAAGAAAGAGCAACTGCTGGAAGATTCCACAGAGGACTTAG
ATTATGGTTTTTTGTCTAACTACAAGCTTCTCAATACTGCCATCACAAGAGCACAATCCC
TGGTTGCTGTGGTGGGTGATCCCATTGCTCTGTGCTCTATTGGAAGATGCAGGAAATTTT
GGGAGCGGTTTATTGCCCTGTGTCATGAAAATAATAGCCTACACGGAATCACTTTTGAAC
AGATCAAAGCTCAGCTCGAGGCTTTGGAATTAAAGAAGACACATGTGTTGAATCCACTGG
CACCTGAATTTATCCCCCGGGCCCTAAGAGTGCAGCATACAGGAAATGCCACCAAATTGC
AGCAGTCACCCCCCTAGGGGAAAAGCCTCCACCATACCCAGAATGATCATTTCCAGAATG
ATGGAATTGTTCAGCCCAATCCTTCTGTACTTATTGGGCATCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCACGGGGGGAAGATGTACAGGAAAAAAATAGCACAGCTTTTTATAATAATGCAGAGG
TATTTGAAGTGGTGGAACGTGTGGAAGAGTTAAGACGGAAGTGGCCAGTAGCGTGGGGGA
AGTTGGATGATGGCAGTATCGGTGTGGTGACTCCATATGCTGATCAAGTGTTCAGGATAC
GTGCCGAACTTCGAAAAAAGAGATTGTCTGATGTTAATGTAGAAAGGGTGCTAAATGTTC
AAGGAAAGCAATTCAGAGTTTTGTTTCTTAGCACAGTACGTACAAGGCATACTTGTAAAC
ATAAACAGACACCAATTAAAAAGAAAGAGCAACTGCTGGAAGATTCCACAGAGGACTTAG
ATTATGGTTTTTTGTCTAACTACAAGCTTCTCAATACTGCCATCACAAGAGCACAATCCC
TGGTTGCTGTGGTGGGTGATCCCATTGCTCTGTGCTCTATTGGAAGATGCAGGAAATTTT
GGGAGCGGTTTATTGCCCTGTGTCATGAAAATAATAGCCTACACGGAATCACTTTTGAAC
AGATCAAAGCTCAGCTCGAGGCTTTGGAATTAAAGAAGACACATGTGTTGAATCCACTGG
CACCTGAATTTATCCCCCGGGCCCTAAGAGTGCAGCATACAGGAAATGCCACCAAATTGC
AGCAGTCACCCCCCTAGGGGAAAAGCCTCCACCATACCCAGAATGATCATTTCCAGAATG
ATGGAATTGTTCAGCCCAATCCTTCTGTACTTATTGGGCATCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61825925|ref|XP_587869.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61825925|ref|XP_587869.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               355-478, - strand, RNAz p=0.763294

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-478, - strand, RNAz p=0.763294

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               236-478, gnl|bosTau2|chr19 (50594695-50594453)
               

               
               236-478, gnl|Hg17|chr17 (62562784-62562542)
               

               
               236-478, gnl|Mm7|chr11 (107758145-107758387)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               236-478, gnl|bosTau2|chr19 (50594695-50594453)
               

               
               236-478, gnl|Hg17|chr17 (62562784-62562542)
               

               
               236-478, gnl|Mm7|chr11 (107758145-107758387)

	236-478, gnl\|bosTau2\|chr19 (50594695-50594453)
	236-478, gnl\|Hg17\|chr17 (62562784-62562542)
	236-478, gnl\|Mm7\|chr11 (107758145-107758387)