Non-Coding RNA Search

Ova1-OVRM10088A12

Sequence:


               
               GTCAGCGAAGAAGCTATTAAACGAACAGAGTTCAACAAAACTGAGAGTGTACAGAATGTT
GTTGTTTCTGGATTATTGTCCCCTGATGGGCTGGCATGTGATTGGCTTGGAGAAAAATTA
TACTGGACAGATTCTGAAACTAATCGTATTGAAGTTTCTAATTTAGATGGATCTTTACGC
AAAGTTTTATTTTGGCAAGAGTTGGATCAGCCCAGAGCTATTGCCTTAGATCCTTCGAGT
GGGTTCATGTACTGGACAGACTGGGGAGAAGTACCAAAGATAGAACGTGCTGGAATGGAT
GGTTCAAGTCGCTTCATTATAATAAACACTGAAATATACTGGCCAAATGGACTGACTTTA
GATTATGAGGAACGGAAGCTTTATTGGGCAGATGCAAAGCTTAATTTCATCCACAAATCA
AATCTGGATGGAACAAATCGGCAGGCGGTGGTTAAAGGTTCCCTTCCACATCCTTTTGCC
TTGACGTTATTTGAGGACACGTTGTACTGGACTGACTGGAATACACACTCTATTTTGGCT
TGCAACAAGTATACTGGCGAAGGTCTGCGTGAAATCCACTCTAACATCTTCTCTCCCATG
GATATACATGCCTTCAGCCAACAGAGACAGCCAAATGCTACAAATCCATGCGGAATTGAT
AATGGTGGCTGTTCCCACTTGTGTTTGATGTCTCCAGTCAAGCCTTTTTATCAGTGTGCT
TGCCCCACTGGGGTCAAACTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGCGAAGAAGCTATTAAACGAACAGAGTTCAACAAAACTGAGAGTGTACAGAATGTT
GTTGTTTCTGGATTATTGTCCCCTGATGGGCTGGCATGTGATTGGCTTGGAGAAAAATTA
TACTGGACAGATTCTGAAACTAATCGTATTGAAGTTTCTAATTTAGATGGATCTTTACGC
AAAGTTTTATTTTGGCAAGAGTTGGATCAGCCCAGAGCTATTGCCTTAGATCCTTCGAGT
GGGTTCATGTACTGGACAGACTGGGGAGAAGTACCAAAGATAGAACGTGCTGGAATGGAT
GGTTCAAGTCGCTTCATTATAATAAACACTGAAATATACTGGCCAAATGGACTGACTTTA
GATTATGAGGAACGGAAGCTTTATTGGGCAGATGCAAAGCTTAATTTCATCCACAAATCA
AATCTGGATGGAACAAATCGGCAGGCGGTGGTTAAAGGTTCCCTTCCACATCCTTTTGCC
TTGACGTTATTTGAGGACACGTTGTACTGGACTGACTGGAATACACACTCTATTTTGGCT
TGCAACAAGTATACTGGCGAAGGTCTGCGTGAAATCCACTCTAACATCTTCTCTCCCATG
GATATACATGCCTTCAGCCAACAGAGACAGCCAAATGCTACAAATCCATGCGGAATTGAT
AATGGTGGCTGTTCCCACTTGTGTTTGATGTCTCCAGTCAAGCCTTTTTATCAGTGTGCT
TGCCCCACTGGGGTCAAACTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               126-244, - strand, RNAz p=0.605207

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-244, - strand, RNAz p=0.605207

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-244, gnl|bosTau2|chr19 (55269703-55269946)
               

               
               1-244, gnl|canFam2|chr27 (37046892-37046590)
               

               
               1-244, gnl|danRer3|chr7 (4312730-4312437)
               

               
               1-244, gnl|dasNov1|scaffold_11516 (54094-54398)
               

               
               1-244, gnl|echTel1|scaffold_298131 (4193-3889)
               

               
               1-244, gnl|fr1|chrUn (252795001-252794634)
               

               
               1-244, gnl|galGal2|chrUn (157245196-157245489)
               

               
               1-244, gnl|hg17|chr12 (12288441-12288745)
               

               
               1-244, gnl|Hg17|chr12 (12288704-12288461)
               

               
               1-244, gnl|loxAfr1|scaffold_13304 (20872-21178)
               

               
               1-244, gnl|mm7|chr6 (134555140-134555440)
               

               
               1-244, gnl|Mm7|chr6 (134555399-134555156)
               

               
               1-244, gnl|monDom2|scaffold_31 (19112575-19112277)
               

               
               1-244, gnl|oryCun1|scaffold_209305 (50069-49768)
               

               
               1-244, gnl|panTro1|chrUn_random (38538250-38538554)
               

               
               1-244, gnl|rheMac2|chr11 (12601524-12601828)
               

               
               1-244, gnl|rn3|chr4 (171689460-171689757)
               

               
               1-244, gnl|tetNig1|chrUn_random (89698464-89698754)
               

               
               1-244, gnl|xenTro1|scaffold_1325 (14307-14016)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-244, gnl|bosTau2|chr19 (55269703-55269946)
               

               
               1-244, gnl|canFam2|chr27 (37046892-37046590)
               

               
               1-244, gnl|danRer3|chr7 (4312730-4312437)
               

               
               1-244, gnl|dasNov1|scaffold_11516 (54094-54398)
               

               
               1-244, gnl|echTel1|scaffold_298131 (4193-3889)
               

               
               1-244, gnl|fr1|chrUn (252795001-252794634)
               

               
               1-244, gnl|galGal2|chrUn (157245196-157245489)
               

               
               1-244, gnl|hg17|chr12 (12288441-12288745)
               

               
               1-244, gnl|Hg17|chr12 (12288704-12288461)
               

               
               1-244, gnl|loxAfr1|scaffold_13304 (20872-21178)
               

               
               1-244, gnl|mm7|chr6 (134555140-134555440)
               

               
               1-244, gnl|Mm7|chr6 (134555399-134555156)
               

               
               1-244, gnl|monDom2|scaffold_31 (19112575-19112277)
               

               
               1-244, gnl|oryCun1|scaffold_209305 (50069-49768)
               

               
               1-244, gnl|panTro1|chrUn_random (38538250-38538554)
               

               
               1-244, gnl|rheMac2|chr11 (12601524-12601828)
               

               
               1-244, gnl|rn3|chr4 (171689460-171689757)
               

               
               1-244, gnl|tetNig1|chrUn_random (89698464-89698754)
               

               
               1-244, gnl|xenTro1|scaffold_1325 (14307-14016)

	1-244, gnl\|bosTau2\|chr19 (55269703-55269946)
	1-244, gnl\|canFam2\|chr27 (37046892-37046590)
	1-244, gnl\|danRer3\|chr7 (4312730-4312437)
	1-244, gnl\|dasNov1\|scaffold_11516 (54094-54398)
	1-244, gnl\|echTel1\|scaffold_298131 (4193-3889)
	1-244, gnl\|fr1\|chrUn (252795001-252794634)
	1-244, gnl\|galGal2\|chrUn (157245196-157245489)
	1-244, gnl\|hg17\|chr12 (12288441-12288745)
	1-244, gnl\|Hg17\|chr12 (12288704-12288461)
	1-244, gnl\|loxAfr1\|scaffold_13304 (20872-21178)
	1-244, gnl\|mm7\|chr6 (134555140-134555440)
	1-244, gnl\|Mm7\|chr6 (134555399-134555156)
	1-244, gnl\|monDom2\|scaffold_31 (19112575-19112277)
	1-244, gnl\|oryCun1\|scaffold_209305 (50069-49768)
	1-244, gnl\|panTro1\|chrUn_random (38538250-38538554)
	1-244, gnl\|rheMac2\|chr11 (12601524-12601828)
	1-244, gnl\|rn3\|chr4 (171689460-171689757)
	1-244, gnl\|tetNig1\|chrUn_random (89698464-89698754)
	1-244, gnl\|xenTro1\|scaffold_1325 (14307-14016)