Non-Coding RNA Search

Ova1-OVRM10088F06

Sequence:


               
               ACTTGCGCCGAACATGGCCGCCGCCGCCGGCGCCGGTGCCGCCCGCCCGGCCGAGCCTGG
AACACAAGATTGAAAATGACAGCTCAAGACCTTCCTGAAGAACTGTCCTGTGACATGGAG
TTGGAAGGATTTACGAGACAGGGTCCCCATTTCTCCATTTTAGATGACAGTTGGAATTGT
GAGAGCCAGGAGGGATGTTTGAAGCAATCAGCCTTAACTCAGGAGGAACCAGGAGCTCAG
AAAGCAGTTCATGAATATCCTGGATTTGGGGAGCATTTGAGTGTGAGCCCAGACCTTCCA
CGATATCAAAGAGTTCCTACAACAAATGGTTTCTGTGTACATGGCTCAGATGTTAAAAGT
CTGGATTGTGACCCAGCTTTACACAGTTGTCACAAAAGTTATGTAGCTAGGAGAACAGGT
GACAGTGATGCCTGTGGGAAAACCTTCAGTCATTCCATAGAAGTTATTCAATTTGGAAGA
ACTCAAACTAGAGAGAAACCCTGTAAATACCCTGAGACTGTTAAGTCTTTCAGTCCTTTT
GCCCCTCTTGGTGAACAAAAAATAATGAAAAGAGGAAAGAAATTGTATGAAGGTAAGGAT
TTTGGGGACATCTTTACCCTGAGTTCATCTCTTAATGAAAACAAGAGGAGCAGCCCTGGA
GAGAAGCTGTATAAATGTACTGAATGCGGCAAGTGCTTCAAACCGGACTCTTCTCTTGTT
TTACATCACCGAACTCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTGCGCCGAACATGGCCGCCGCCGCCGGCGCCGGTGCCGCCCGCCCGGCCGAGCCTGG
AACACAAGATTGAAAATGACAGCTCAAGACCTTCCTGAAGAACTGTCCTGTGACATGGAG
TTGGAAGGATTTACGAGACAGGGTCCCCATTTCTCCATTTTAGATGACAGTTGGAATTGT
GAGAGCCAGGAGGGATGTTTGAAGCAATCAGCCTTAACTCAGGAGGAACCAGGAGCTCAG
AAAGCAGTTCATGAATATCCTGGATTTGGGGAGCATTTGAGTGTGAGCCCAGACCTTCCA
CGATATCAAAGAGTTCCTACAACAAATGGTTTCTGTGTACATGGCTCAGATGTTAAAAGT
CTGGATTGTGACCCAGCTTTACACAGTTGTCACAAAAGTTATGTAGCTAGGAGAACAGGT
GACAGTGATGCCTGTGGGAAAACCTTCAGTCATTCCATAGAAGTTATTCAATTTGGAAGA
ACTCAAACTAGAGAGAAACCCTGTAAATACCCTGAGACTGTTAAGTCTTTCAGTCCTTTT
GCCCCTCTTGGTGAACAAAAAATAATGAAAAGAGGAAAGAAATTGTATGAAGGTAAGGAT
TTTGGGGACATCTTTACCCTGAGTTCATCTCTTAATGAAAACAAGAGGAGCAGCCCTGGA
GAGAAGCTGTATAAATGTACTGAATGCGGCAAGTGCTTCAAACCGGACTCTTCTCTTGTT
TTACATCACCGAACTCAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               207-326, - strand, RNAz p=0.847234
               

               
               619-738, - strand, RNAz p=0.963232

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-326, - strand, RNAz p=0.847234
               

               
               619-738, - strand, RNAz p=0.963232

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               54-738, gnl|bosTau2|chr18 (56315442-56316129)
               

               
               54-738, gnl|Hg17|chr19 (63332692-63332137)
               

               
               54-738, gnl|Mm7|chr7 (11398249-11397559)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-738, gnl|bosTau2|chr18 (56315442-56316129)
               

               
               54-738, gnl|Hg17|chr19 (63332692-63332137)
               

               
               54-738, gnl|Mm7|chr7 (11398249-11397559)

	207-326, - strand, RNAz p=0.847234
	619-738, - strand, RNAz p=0.963232

	54-738, gnl\|bosTau2\|chr18 (56315442-56316129)
	54-738, gnl\|Hg17\|chr19 (63332692-63332137)
	54-738, gnl\|Mm7\|chr7 (11398249-11397559)