Non-Coding RNA Search

Ova1-OVRM10090B10

Sequence:


               
               TTCCATTCTGTTTCTCCCAATGTGAACCGGAATTTTTATCTAATGTCATTTATTGCTTTT
CACGTAGTTTCTAACATTTCGCTACTTCCATGGAATTTTTGTTATCCTTTTTCTTACCCA
CCTGTCTTTCCTAAAAGAGCATAGTAGGGGCACTAGCTCCAGGTTAGCCCCCCTTATGCT
ACTTACTAGCTGTGCGATCCTAGAAGAGTCATTACTTCTCTCTGAGCTTCGATCTGTAAA
GTGGGAGGAATAAGGTCTTACCTCCCTGGGGCAGAAGGAGGGTGGACTAGGTAATTCTAA
TTCTATTCCCACTCAGGACATTCTCTCATGTTCTCTGTCTCTTTATGTGCTTGTGTCCTT
CTGGACACCTTTCAATCTTTATTGAACCTTATCTTTGATTTTTAGTTACATAATCCATAT
ATCTTCCTACAATTTTTCTTTGCCTTGTACTTCTCGTGATTTCCATTTGCTGAAGAAGTG
AGTGGGTTGGTTTTCTTTCTACCTACCTACTCTCCAGCAGCACCACCAGGGTACCATCCA
CTGAATACCTGCTCTGTGCCTGGCTTTGTGCCGAATGGTAAACATTACCTCCATAATTTC
TTTCAATAATCCTACCGGTTGGCTGTCATCATCCCATTTTATAGATGAGAAGCTCATTGA
GGTGAAATAACTCGACCAAGGTCACACACTAAATGGTGGCACCAGACTGTGGACCTGGTC
ATCCCTGGCTCCAAAGATCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCATTCTGTTTCTCCCAATGTGAACCGGAATTTTTATCTAATGTCATTTATTGCTTTT
CACGTAGTTTCTAACATTTCGCTACTTCCATGGAATTTTTGTTATCCTTTTTCTTACCCA
CCTGTCTTTCCTAAAAGAGCATAGTAGGGGCACTAGCTCCAGGTTAGCCCCCCTTATGCT
ACTTACTAGCTGTGCGATCCTAGAAGAGTCATTACTTCTCTCTGAGCTTCGATCTGTAAA
GTGGGAGGAATAAGGTCTTACCTCCCTGGGGCAGAAGGAGGGTGGACTAGGTAATTCTAA
TTCTATTCCCACTCAGGACATTCTCTCATGTTCTCTGTCTCTTTATGTGCTTGTGTCCTT
CTGGACACCTTTCAATCTTTATTGAACCTTATCTTTGATTTTTAGTTACATAATCCATAT
ATCTTCCTACAATTTTTCTTTGCCTTGTACTTCTCGTGATTTCCATTTGCTGAAGAAGTG
AGTGGGTTGGTTTTCTTTCTACCTACCTACTCTCCAGCAGCACCACCAGGGTACCATCCA
CTGAATACCTGCTCTGTGCCTGGCTTTGTGCCGAATGGTAAACATTACCTCCATAATTTC
TTTCAATAATCCTACCGGTTGGCTGTCATCATCCCATTTTATAGATGAGAAGCTCATTGA
GGTGAAATAACTCGACCAAGGTCACACACTAAATGGTGGCACCAGACTGTGGACCTGGTC
ATCCCTGGCTCCAAAGATCACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               77-235, - strand, RNAz p=0.994408
               

               
               354-471, - strand, RNAz p=0.986913

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-235, - strand, RNAz p=0.994408
               

               
               354-471, - strand, RNAz p=0.986913

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               77-738, gnl|bosTau2|chr6 (21085782-21085133)
               

               
               77-738, gnl|Hg17|chr4 (23610401-23609722)
               

               
               77-738, gnl|Mm7|chr5 (50966311-50965709)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               77-738, gnl|bosTau2|chr6 (21085782-21085133)
               

               
               77-738, gnl|Hg17|chr4 (23610401-23609722)
               

               
               77-738, gnl|Mm7|chr5 (50966311-50965709)

	77-235, - strand, RNAz p=0.994408
	354-471, - strand, RNAz p=0.986913

	77-738, gnl\|bosTau2\|chr6 (21085782-21085133)
	77-738, gnl\|Hg17\|chr4 (23610401-23609722)
	77-738, gnl\|Mm7\|chr5 (50966311-50965709)