Non-Coding RNA Search

Ova1-OVRM10091C12

Sequence:


               
               GTCCTGAGGTCCAGGAAGCTGAAGAGAGCCCCCCGAGGTTGGGGTATGAGACTGATCTCA
GCCCCGGGGGCAATGGGAACACCAGCTCCACGGCTCTGGGGTGGGATCAGCCCACAGGCT
GGGTGGCTTCTGATAAACAAGCCAGTGAAGACAAACTTCCAGAACATTCTGAGGTCAACC
CAACTATTGACTTCAGCCCTGCTAGGTCCTGGAGCAGTGGAACCGTGAGCCTCAACCACC
CCAGTGACAGCCTTGATTCCACCTGGGAAGGGGACGCTGATGTCCCCCAGCCCCCTGCCC
TGGCAGAAACGTCACCGCAGAGCCCCAGCCACCATCTCCTGAACCCAAGCGACAGAACTG
GAGGAAGCGTTGCTCTGGCAACCCCCACAGAATTCCAGGAGTCCTCCGCGCCTCCAGCCC
AGAGCCTCCAGTGTCCCGCTGATAGATGGAGGGGAGAAACTACCAGCCTCCCCTGCCCTC
AGCCTGGGGACCAGGCCTGGAAGCGGACCCGGATATCACCTAAGCCGCTGCCTTCTCGAT
TCACCGGCGCCATCAGCCCCCAGAGCTCCTCGCCTCGGCCAGCTCGGCAGGGCAGGCCGC
CGCCCAGGCCGGGAGCCACTCTGGCTGGCCACTCATCTTCTGATGCCCCCAAGTACGGCC
GGNGGCGGCTGAACTACCCACTCCCTGACTTCTCCAAGGTGGGACCCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCTGAGGTCCAGGAAGCTGAAGAGAGCCCCCCGAGGTTGGGGTATGAGACTGATCTCA
GCCCCGGGGGCAATGGGAACACCAGCTCCACGGCTCTGGGGTGGGATCAGCCCACAGGCT
GGGTGGCTTCTGATAAACAAGCCAGTGAAGACAAACTTCCAGAACATTCTGAGGTCAACC
CAACTATTGACTTCAGCCCTGCTAGGTCCTGGAGCAGTGGAACCGTGAGCCTCAACCACC
CCAGTGACAGCCTTGATTCCACCTGGGAAGGGGACGCTGATGTCCCCCAGCCCCCTGCCC
TGGCAGAAACGTCACCGCAGAGCCCCAGCCACCATCTCCTGAACCCAAGCGACAGAACTG
GAGGAAGCGTTGCTCTGGCAACCCCCACAGAATTCCAGGAGTCCTCCGCGCCTCCAGCCC
AGAGCCTCCAGTGTCCCGCTGATAGATGGAGGGGAGAAACTACCAGCCTCCCCTGCCCTC
AGCCTGGGGACCAGGCCTGGAAGCGGACCCGGATATCACCTAAGCCGCTGCCTTCTCGAT
TCACCGGCGCCATCAGCCCCCAGAGCTCCTCGCCTCGGCCAGCTCGGCAGGGCAGGCCGC
CGCCCAGGCCGGGAGCCACTCTGGCTGGCCACTCATCTTCTGATGCCCCCAAGTACGGCC
GGNGGCGGCTGAACTACCCACTCCCTGACTTCTCCAAGGTGGGACCCCGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               81-200, - strand, RNAz p=0.653011
               

               
               521-640, - strand, RNAz p=0.776962

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, - strand, RNAz p=0.653011
               

               
               521-640, - strand, RNAz p=0.776962

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               540-644, - strand, RNAmicro p=0.933342

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               540-644, - strand, RNAmicro p=0.933342

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-710, gnl|bosTau2|chr8 (57582854-57582145)
               

               
               1-710, gnl|Hg17|chr9 (114219249-114218540)
               

               
               1-710, gnl|Mm7|chr4 (62829212-62828519)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-710, gnl|bosTau2|chr8 (57582854-57582145)
               

               
               1-710, gnl|Hg17|chr9 (114219249-114218540)
               

               
               1-710, gnl|Mm7|chr4 (62829212-62828519)

	81-200, - strand, RNAz p=0.653011
	521-640, - strand, RNAz p=0.776962

	1-710, gnl\|bosTau2\|chr8 (57582854-57582145)
	1-710, gnl\|Hg17\|chr9 (114219249-114218540)
	1-710, gnl\|Mm7\|chr4 (62829212-62828519)