Non-Coding RNA Search

Ova1-OVRM10091E06

Sequence:


               
               AGCCGCCGGGAGCACCCGGAGGGACGGGAGGCAGCGGCGCGGCCCCGAGCTGGGCAGGGT
CCCCAGCCGCCATGGATAGCGACGACGAGATGGTGGAGGAGGCGGTGGAAGGGCACCTGG
ATGACGACGGATTGCCACATGGCTTCTGCACGGTCACCTACTCCTCCACGGACAGATTTG
AAGGCAACTTCGTTCATGGAGAAAAGAACGGCCGGGGCAAGTTCTTCTTCTTTGATGGCA
GCACCTTGGAGGGATATTATGTGGACGATGCCCTGCAGGGCCAGGGAGTTTACACGTATG
AGGACGGGGGCGTTCTCCAGGGCATGTATGTAGACGGCGAGCTGAATGGACCAGCCCAGG
AGTACGACACGGATGGGAGACTGATCTTCAAAGGGCAGTACAAAGATAACATTCGGCATG
GAGTGTGCTGGATATACTACCCAGATGGAGGTAGCCTTGTACGAGAAGTAAATGAACATG
GGGAGATGACAGGAGAGAAGATAGCCTATGTGTACCCGGATGAGAGGACTGCTCTGTATG
GAAAGTTCATTGATGGAGAGATGATAGAAGGGAAACTGGCTACTCTCATGTCCATGGAAG
AAGGAAAGCCTCACTTTGAACTGATGCCTGGAAGTGCAGTGTACCACTTTGATAAGTCCA
CTTCATCCTGCATTTCTACCAGTGCTCTCCCTCCTGATCCATATGAATCAGAAGAGGTTC
ATGTTGCTGAATCCCTCATTTCCAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCGCCGGGAGCACCCGGAGGGACGGGAGGCAGCGGCGCGGCCCCGAGCTGGGCAGGGT
CCCCAGCCGCCATGGATAGCGACGACGAGATGGTGGAGGAGGCGGTGGAAGGGCACCTGG
ATGACGACGGATTGCCACATGGCTTCTGCACGGTCACCTACTCCTCCACGGACAGATTTG
AAGGCAACTTCGTTCATGGAGAAAAGAACGGCCGGGGCAAGTTCTTCTTCTTTGATGGCA
GCACCTTGGAGGGATATTATGTGGACGATGCCCTGCAGGGCCAGGGAGTTTACACGTATG
AGGACGGGGGCGTTCTCCAGGGCATGTATGTAGACGGCGAGCTGAATGGACCAGCCCAGG
AGTACGACACGGATGGGAGACTGATCTTCAAAGGGCAGTACAAAGATAACATTCGGCATG
GAGTGTGCTGGATATACTACCCAGATGGAGGTAGCCTTGTACGAGAAGTAAATGAACATG
GGGAGATGACAGGAGAGAAGATAGCCTATGTGTACCCGGATGAGAGGACTGCTCTGTATG
GAAAGTTCATTGATGGAGAGATGATAGAAGGGAAACTGGCTACTCTCATGTCCATGGAAG
AAGGAAAGCCTCACTTTGAACTGATGCCTGGAAGTGCAGTGTACCACTTTGATAAGTCCA
CTTCATCCTGCATTTCTACCAGTGCTCTCCCTCCTGATCCATATGAATCAGAAGAGGTTC
ATGTTGCTGAATCCCTCATTTCCAGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57770563|ref|NP_001009915.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57770563|ref|NP_001009915.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               222-339, + strand, RNAz p=0.814299

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               222-339, + strand, RNAz p=0.814299

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-112, gnl|bosTau2|chr17 (11232579-11232690)
               

               
               1-112, gnl|Hg17|chr4 (140834967-140834856)
               

               
               1-112, gnl|Mm7|chr3 (51685155-51685045)
               


               
               222-444, gnl|bosTau2|chr17 (11261362-11261585)
               

               
               222-444, gnl|canFam2|chr19 (6202177-6201943)
               

               
               222-444, gnl|danRer3|chrUn (148628415-148628638)
               

               
               222-444, gnl|echTel1|scaffold_282676 (47304-47497)
               

               
               222-444, gnl|galGal2|chr4 (29829281-29829514)
               

               
               222-444, gnl|hg17|chr4 (140811919-140812153)
               

               
               222-444, gnl|Hg17|chr4 (140812146-140811923)
               

               
               222-444, gnl|loxAfr1|scaffold_13905 (15856-15622)
               

               
               222-444, gnl|mm7|chr3 (51667155-51667388)
               

               
               222-444, gnl|Mm7|chr3 (51667382-51667159)
               

               
               222-444, gnl|monDom2|scaffold_9 (7040124-7040355)
               

               
               222-444, gnl|oryCun1|scaffold_208533 (93710-93943)
               

               
               222-444, gnl|panTro1|chr3 (158063032-158063266)
               

               
               222-444, gnl|rheMac2|chr5 (132006149-132006383)
               

               
               222-444, gnl|rn3|chr2 (140385508-140385741)
               

               
               222-444, gnl|tetNig1|chrUn_random (100976814-100977032)
               

               
               222-444, gnl|xenTro1|scaffold_429 (195017-195244)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-112, gnl|bosTau2|chr17 (11232579-11232690)
               

               
               1-112, gnl|Hg17|chr4 (140834967-140834856)
               

               
               1-112, gnl|Mm7|chr3 (51685155-51685045)
               


               
               222-444, gnl|bosTau2|chr17 (11261362-11261585)
               

               
               222-444, gnl|canFam2|chr19 (6202177-6201943)
               

               
               222-444, gnl|danRer3|chrUn (148628415-148628638)
               

               
               222-444, gnl|echTel1|scaffold_282676 (47304-47497)
               

               
               222-444, gnl|galGal2|chr4 (29829281-29829514)
               

               
               222-444, gnl|hg17|chr4 (140811919-140812153)
               

               
               222-444, gnl|Hg17|chr4 (140812146-140811923)
               

               
               222-444, gnl|loxAfr1|scaffold_13905 (15856-15622)
               

               
               222-444, gnl|mm7|chr3 (51667155-51667388)
               

               
               222-444, gnl|Mm7|chr3 (51667382-51667159)
               

               
               222-444, gnl|monDom2|scaffold_9 (7040124-7040355)
               

               
               222-444, gnl|oryCun1|scaffold_208533 (93710-93943)
               

               
               222-444, gnl|panTro1|chr3 (158063032-158063266)
               

               
               222-444, gnl|rheMac2|chr5 (132006149-132006383)
               

               
               222-444, gnl|rn3|chr2 (140385508-140385741)
               

               
               222-444, gnl|tetNig1|chrUn_random (100976814-100977032)
               

               
               222-444, gnl|xenTro1|scaffold_429 (195017-195244)

	1-112, gnl\|bosTau2\|chr17 (11232579-11232690)
	1-112, gnl\|Hg17\|chr4 (140834967-140834856)
	1-112, gnl\|Mm7\|chr3 (51685155-51685045)

	222-444, gnl\|bosTau2\|chr17 (11261362-11261585)
	222-444, gnl\|canFam2\|chr19 (6202177-6201943)
	222-444, gnl\|danRer3\|chrUn (148628415-148628638)
	222-444, gnl\|echTel1\|scaffold_282676 (47304-47497)
	222-444, gnl\|galGal2\|chr4 (29829281-29829514)
	222-444, gnl\|hg17\|chr4 (140811919-140812153)
	222-444, gnl\|Hg17\|chr4 (140812146-140811923)
	222-444, gnl\|loxAfr1\|scaffold_13905 (15856-15622)
	222-444, gnl\|mm7\|chr3 (51667155-51667388)
	222-444, gnl\|Mm7\|chr3 (51667382-51667159)
	222-444, gnl\|monDom2\|scaffold_9 (7040124-7040355)
	222-444, gnl\|oryCun1\|scaffold_208533 (93710-93943)
	222-444, gnl\|panTro1\|chr3 (158063032-158063266)
	222-444, gnl\|rheMac2\|chr5 (132006149-132006383)
	222-444, gnl\|rn3\|chr2 (140385508-140385741)
	222-444, gnl\|tetNig1\|chrUn_random (100976814-100977032)
	222-444, gnl\|xenTro1\|scaffold_429 (195017-195244)