Non-Coding RNA Search

Ova1-OVRM10094E01

Sequence:


               
               CTCGGAGCCTCATGCATCTCATCTACCTCATTGCCTGACAGTCCGTTTTGGCATAAGCAA
GATGAATAATGTAGACAATCTCTCCTATGGGAATTAAATTTAAAATGAAAGCTCTAAGTA
ACTGGTATCTAAAGATCATGTTATAAAGCTGGCATCCATATCCTCTGTCCCATGGTACCC
TGTTGTCCTTGGAGGCTGCACATACACCTGTCATTCATTTGCCCTCAGTTTCTAAGGTGG
CAGGATGCCAGCCCCAGCCAAGTGTTCACAGTGCAAAGTGCTTTAGACTCTTCTAAAATG
AAAGTCAGTATGTAAATGTGCAACATGACGACATTATTATTCTAGCTTCCTGGCTGCTTT
CAGCAAGCTCTGACTGCCACATGAGGTCTCAAGTGTTCTGGCACAGTGTGCAAGTGTTCA
AAAGAAGTTAAAGTAATGAAATTGGATCTACATTTCCATAGAGATTCAAGCTGGCATGGA
GGATTGGAGTCATGGGTTGGATGGTCTCCACCAAACAGCCTAGGCAAGTGCCTGTGATGC
CAGGCTACTAAGCAGAATTTTCAATCGTGAAAGGCCACCACTATTTCTTCCCCCGGGTCT
AAAATTACAAAATGTGCATATTTCCCCTAGGCTCCCACCAATCTGTGGGTGCTTTATGCT
CAATCCTCACTCACCCATTTCCTGGAGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGGAGCCTCATGCATCTCATCTACCTCATTGCCTGACAGTCCGTTTTGGCATAAGCAA
GATGAATAATGTAGACAATCTCTCCTATGGGAATTAAATTTAAAATGAAAGCTCTAAGTA
ACTGGTATCTAAAGATCATGTTATAAAGCTGGCATCCATATCCTCTGTCCCATGGTACCC
TGTTGTCCTTGGAGGCTGCACATACACCTGTCATTCATTTGCCCTCAGTTTCTAAGGTGG
CAGGATGCCAGCCCCAGCCAAGTGTTCACAGTGCAAAGTGCTTTAGACTCTTCTAAAATG
AAAGTCAGTATGTAAATGTGCAACATGACGACATTATTATTCTAGCTTCCTGGCTGCTTT
CAGCAAGCTCTGACTGCCACATGAGGTCTCAAGTGTTCTGGCACAGTGTGCAAGTGTTCA
AAAGAAGTTAAAGTAATGAAATTGGATCTACATTTCCATAGAGATTCAAGCTGGCATGGA
GGATTGGAGTCATGGGTTGGATGGTCTCCACCAAACAGCCTAGGCAAGTGCCTGTGATGC
CAGGCTACTAAGCAGAATTTTCAATCGTGAAAGGCCACCACTATTTCTTCCCCCGGGTCT
AAAATTACAAAATGTGCATATTTCCCCTAGGCTCCCACCAATCTGTGGGTGCTTTATGCT
CAATCCTCACTCACCCATTTCCTGGAGCAC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               5-121, - strand, RNAz p=0.833607
               

               
               433-585, + strand, RNAz p=0.820368
               

               
               573-690, - strand, RNAz p=0.658654

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-121, - strand, RNAz p=0.833607
               

               
               433-585, + strand, RNAz p=0.820368
               

               
               573-690, - strand, RNAz p=0.658654

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               5-690, gnl|bosTau2|chr7 (58563089-58562412)
               

               
               5-690, gnl|canFam2|chr3 (17645509-17644980)
               

               
               5-690, gnl|dasNov1|scaffold_497 (8529-9059)
               

               
               5-690, gnl|echTel1|scaffold_104699 (1993-1462)
               

               
               5-690, gnl|hg17|chr5 (94077050-94077587)
               

               
               5-690, gnl|Hg17|chr5 (94077736-94077052)
               

               
               5-690, gnl|loxAfr1|scaffold_125 (65175-64640)
               

               
               5-690, gnl|mm7|chr13 (74032792-74032257)
               

               
               5-690, gnl|Mm7|chr13 (74032113-74032786)
               

               
               5-690, gnl|monDom2|scaffold_20 (3506037-3505514)
               

               
               5-690, gnl|oryCun1|scaffold_202501 (59727-60243)
               

               
               5-690, gnl|panTro1|chr4 (21125009-21124471)
               

               
               5-690, gnl|rheMac2|chr6 (90939523-90940065)
               

               
               5-690, gnl|rn3|chr2 (4368537-4368002)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-690, gnl|bosTau2|chr7 (58563089-58562412)
               

               
               5-690, gnl|canFam2|chr3 (17645509-17644980)
               

               
               5-690, gnl|dasNov1|scaffold_497 (8529-9059)
               

               
               5-690, gnl|echTel1|scaffold_104699 (1993-1462)
               

               
               5-690, gnl|hg17|chr5 (94077050-94077587)
               

               
               5-690, gnl|Hg17|chr5 (94077736-94077052)
               

               
               5-690, gnl|loxAfr1|scaffold_125 (65175-64640)
               

               
               5-690, gnl|mm7|chr13 (74032792-74032257)
               

               
               5-690, gnl|Mm7|chr13 (74032113-74032786)
               

               
               5-690, gnl|monDom2|scaffold_20 (3506037-3505514)
               

               
               5-690, gnl|oryCun1|scaffold_202501 (59727-60243)
               

               
               5-690, gnl|panTro1|chr4 (21125009-21124471)
               

               
               5-690, gnl|rheMac2|chr6 (90939523-90940065)
               

               
               5-690, gnl|rn3|chr2 (4368537-4368002)

	5-121, - strand, RNAz p=0.833607
	433-585, + strand, RNAz p=0.820368
	573-690, - strand, RNAz p=0.658654

	5-690, gnl\|bosTau2\|chr7 (58563089-58562412)
	5-690, gnl\|canFam2\|chr3 (17645509-17644980)
	5-690, gnl\|dasNov1\|scaffold_497 (8529-9059)
	5-690, gnl\|echTel1\|scaffold_104699 (1993-1462)
	5-690, gnl\|hg17\|chr5 (94077050-94077587)
	5-690, gnl\|Hg17\|chr5 (94077736-94077052)
	5-690, gnl\|loxAfr1\|scaffold_125 (65175-64640)
	5-690, gnl\|mm7\|chr13 (74032792-74032257)
	5-690, gnl\|Mm7\|chr13 (74032113-74032786)
	5-690, gnl\|monDom2\|scaffold_20 (3506037-3505514)
	5-690, gnl\|oryCun1\|scaffold_202501 (59727-60243)
	5-690, gnl\|panTro1\|chr4 (21125009-21124471)
	5-690, gnl\|rheMac2\|chr6 (90939523-90940065)
	5-690, gnl\|rn3\|chr2 (4368537-4368002)