Non-Coding RNA Search

Ova1-OVRM10096A10

Sequence:


               
               GGATGGCAGCGATGAGTAGTTGCAGCTGACGCTGCATGGCCTGCAAAGCCTGCAACACTC
ACTTTCTGGCTCTTGGCAGAAAAACTTTGCTGACTGTAGTGCGGGAGAGTGTTTACATTT
TGACTTGAAGGAATCTCGTTTCACCTGGGAAAGAATGAGGTTTGTGGTCTGATGAGCCTT
AGTGAAGCCAGTGCCTCAATGTCTCATGTCCTCTTCTCTCCACGCCACCCCTCCCCCCAC
CCCGATTCAGCCATCGCCCTTCTTAAGGACCAGGAGCCAGGGGCTTTCATCATCCGTGAC
AGTCACTCCTTCCGAGGAGCCTATGGGCTAGCCATGAAGGTGTCTTCACCCCCTCCGACT
ATCATGCAGCAGAATAAAAAAGGTAACACTGGCTTCTCCAGCAGGGCCTCAGGACTAGGC
GGTCCCTAGAGTCTCTTTAGGCCCTGAGCTGCTGGACGCACCCGGGGCAGGGGCTGGGGT
GCTGGACAGGTCTCTAATTCTCACGGGAGTTGGTCCCTACTGAGCAGACTCTTCAGAAGG
GCGGGTCTTAAGCTTGGTGGTGACTGGGGTCAGAGACAGGGAAACAGGATGATTGGGAAC
TTGTGAGTGAGTTTCCTTGAGGGGTGGGCTAGCAGGGGTGGTCTCTCTGGCCATGGCTCT
GGNCATGTTGTTGCTGTGACTGTGGCTCTGGCCATATTATTGCTGTGACTGTGGCTCTGG
CCATGCTATCGTTGTGACTCTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGCAGCGATGAGTAGTTGCAGCTGACGCTGCATGGCCTGCAAAGCCTGCAACACTC
ACTTTCTGGCTCTTGGCAGAAAAACTTTGCTGACTGTAGTGCGGGAGAGTGTTTACATTT
TGACTTGAAGGAATCTCGTTTCACCTGGGAAAGAATGAGGTTTGTGGTCTGATGAGCCTT
AGTGAAGCCAGTGCCTCAATGTCTCATGTCCTCTTCTCTCCACGCCACCCCTCCCCCCAC
CCCGATTCAGCCATCGCCCTTCTTAAGGACCAGGAGCCAGGGGCTTTCATCATCCGTGAC
AGTCACTCCTTCCGAGGAGCCTATGGGCTAGCCATGAAGGTGTCTTCACCCCCTCCGACT
ATCATGCAGCAGAATAAAAAAGGTAACACTGGCTTCTCCAGCAGGGCCTCAGGACTAGGC
GGTCCCTAGAGTCTCTTTAGGCCCTGAGCTGCTGGACGCACCCGGGGCAGGGGCTGGGGT
GCTGGACAGGTCTCTAATTCTCACGGGAGTTGGTCCCTACTGAGCAGACTCTTCAGAAGG
GCGGGTCTTAAGCTTGGTGGTGACTGGGGTCAGAGACAGGGAAACAGGATGATTGGGAAC
TTGTGAGTGAGTTTCCTTGAGGGGTGGGCTAGCAGGGGTGGTCTCTCTGGCCATGGCTCT
GGNCATGTTGTTGCTGTGACTGTGGCTCTGGCCATATTATTGCTGTGACTGTGGCTCTGG
CCATGCTATCGTTGTGACTCTCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               473-574, + strand, RNAz p=0.599137

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               473-574, + strand, RNAz p=0.599137

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AB209238, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB209238, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               2-187, gnl|bosTau2|chr2 (63362077-63361881)
               

               
               2-187, gnl|Hg17|chr2 (218504303-218504101)
               


               
               241-679, gnl|bosTau2|chr2 (63361739-63361278)
               

               
               241-679, gnl|Hg17|chr2 (218504055-218503650)
               

               
               241-679, gnl|Mm7|chr1 (74163347-74162964)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-187, gnl|bosTau2|chr2 (63362077-63361881)
               

               
               2-187, gnl|Hg17|chr2 (218504303-218504101)
               


               
               241-679, gnl|bosTau2|chr2 (63361739-63361278)
               

               
               241-679, gnl|Hg17|chr2 (218504055-218503650)
               

               
               241-679, gnl|Mm7|chr1 (74163347-74162964)

	2-187, gnl\|bosTau2\|chr2 (63362077-63361881)
	2-187, gnl\|Hg17\|chr2 (218504303-218504101)

	241-679, gnl\|bosTau2\|chr2 (63361739-63361278)
	241-679, gnl\|Hg17\|chr2 (218504055-218503650)
	241-679, gnl\|Mm7\|chr1 (74163347-74162964)