Non-Coding RNA Search

Ova1-OVRM10096F08

Sequence:


               
               TCTGTGAACAGAATTAATTGATATTAACAACCCTAACTCTATGCCCAAGTACACATATAA
TATTTTACCAACGGTTTTTTGGATCCATCTCCCATTACTGACTTGTAATTTCAGAGCACA
TTTGCCTGGAGGTAAGTAATAAATCTGTGTTCAGACTTCCATAAGCATTAAAGGAGAAGT
GGGGATTTAGAGAGAGAGAATGCAGAAACTTGTGACTTACGCTTCGACTTTTTACTGGAA
CACGAGTAAGTATTTACAGGGTTCGAAGCTTGCTGAAAATACCCTCATTAAAGCCAAGAG
GCCAATTTAAAGCCCCCCTCCACCCATGCAAAGGGAAAGAAATTCCAAGTTCAGACTGCA
ACTTGCCGAGGGATGCATCCCATTCTACTGAGATGCTGCGCCTCGGAGGTGACTGCAGGA
TCTCCAACGAGGATCTGTCCTGTGGCGCTGAGCAGCCAGAGCCCACGGGGCCTGGGAGAC
CCGCACAGCTGATTTCGCCCAGACTCCGGTCTCTACAGTGAGGAAGTAAGTTTTGTTTTG
GCTGAACCTgcatgaggaagttcctgggccagggatcgaaccccacgccagagcaggcat
ctgagccacagcggtgacaatgctgggtccttaacccgttgagtcac

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTGTGAACAGAATTAATTGATATTAACAACCCTAACTCTATGCCCAAGTACACATATAA
TATTTTACCAACGGTTTTTTGGATCCATCTCCCATTACTGACTTGTAATTTCAGAGCACA
TTTGCCTGGAGGTAAGTAATAAATCTGTGTTCAGACTTCCATAAGCATTAAAGGAGAAGT
GGGGATTTAGAGAGAGAGAATGCAGAAACTTGTGACTTACGCTTCGACTTTTTACTGGAA
CACGAGTAAGTATTTACAGGGTTCGAAGCTTGCTGAAAATACCCTCATTAAAGCCAAGAG
GCCAATTTAAAGCCCCCCTCCACCCATGCAAAGGGAAAGAAATTCCAAGTTCAGACTGCA
ACTTGCCGAGGGATGCATCCCATTCTACTGAGATGCTGCGCCTCGGAGGTGACTGCAGGA
TCTCCAACGAGGATCTGTCCTGTGGCGCTGAGCAGCCAGAGCCCACGGGGCCTGGGAGAC
CCGCACAGCTGATTTCGCCCAGACTCCGGTCTCTACAGTGAGGAAGTAAGTTTTGTTTTG
GCTGAACCTgcatgaggaagttcctgggccagggatcgaaccccacgccagagcaggcat
ctgagccacagcggtgacaatgctgggtccttaacccgttgagtcac

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               40-198, + strand, RNAz p=0.771215

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-198, + strand, RNAz p=0.771215

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-532, gnl|bosTau2|chr4 (45686037-45686565)
               

               
               1-532, gnl|Hg17|chr7 (41888665-41888138)
               

               
               1-532, gnl|Mm7|chr13 (14981592-14982098)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-532, gnl|bosTau2|chr4 (45686037-45686565)
               

               
               1-532, gnl|Hg17|chr7 (41888665-41888138)
               

               
               1-532, gnl|Mm7|chr13 (14981592-14982098)

	1-532, gnl\|bosTau2\|chr4 (45686037-45686565)
	1-532, gnl\|Hg17\|chr7 (41888665-41888138)
	1-532, gnl\|Mm7\|chr13 (14981592-14982098)