Non-Coding RNA Search

Ova1-OVRM10100D12

Sequence:


               
               CGCGCGCCCTGACAGCTCGGCCCTGCTCGCTCACTCGCTCGTCCCCGGCTTCCGAGCACA
GCATGGCGGTCAAGGTGACTCTAACTCTCTGCTGCTCCTTTATAGCATAAGAGATATTCC
CGGGACCCCGCCTGCAGCCCCTCACCTCTTTCCATTTACTTCTTTGCTTAGTTCTTAGAT
AGCATGTCCTGGAGCTCCAGGGAGAGCTGTTCGGCGCTTGGACCGGGAGGGAGAGGATGC
CCGACTGGGGGAGGGGAAGGAGGAGGGTTTGTGAGTTGGAGGGGTTTATGAGGACCACAG
GTCGGTGAAGGAAGTAATATTCTGCCCTAGGTACAGGGGATTCTGAGCCCGGAGTTGGAG
GGCATCAGAACGGGAGTAGGAAGAAATGGCATGTATGGCCGAAGATACCTCAGGCATCTG
TCTATTGCGGTGGGGGAGGGGGTGAGTTAATTGAGTAAATTGGGGCCTCTGGAGCCTGGG
GCAGTGGTTGGTTTTTCGCCACAGGTGATAGGATGTCTAAGTAATTGGAAACGTTGTAGC
AGCTTTCATTATTTTAGGTTGTGTGGAGAAAGAGGGGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCGCCCTGACAGCTCGGCCCTGCTCGCTCACTCGCTCGTCCCCGGCTTCCGAGCACA
GCATGGCGGTCAAGGTGACTCTAACTCTCTGCTGCTCCTTTATAGCATAAGAGATATTCC
CGGGACCCCGCCTGCAGCCCCTCACCTCTTTCCATTTACTTCTTTGCTTAGTTCTTAGAT
AGCATGTCCTGGAGCTCCAGGGAGAGCTGTTCGGCGCTTGGACCGGGAGGGAGAGGATGC
CCGACTGGGGGAGGGGAAGGAGGAGGGTTTGTGAGTTGGAGGGGTTTATGAGGACCACAG
GTCGGTGAAGGAAGTAATATTCTGCCCTAGGTACAGGGGATTCTGAGCCCGGAGTTGGAG
GGCATCAGAACGGGAGTAGGAAGAAATGGCATGTATGGCCGAAGATACCTCAGGCATCTG
TCTATTGCGGTGGGGGAGGGGGTGAGTTAATTGAGTAAATTGGGGCCTCTGGAGCCTGGG
GCAGTGGTTGGTTTTTCGCCACAGGTGATAGGATGTCTAAGTAATTGGAAACGTTGTAGC
AGCTTTCATTATTTTAGGTTGTGTGGAGAAAGAGGGGCGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               308-500, - strand, RNAz p=0.999866

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-500, - strand, RNAz p=0.999866

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-573, gnl|bosTau2|chr2 (17774423-17774998)
               

               
               1-573, gnl|canFam2|chr36 (19306833-19307850)
               

               
               1-573, gnl|dasNov1|scaffold_73635 (1165-2144)
               

               
               1-573, gnl|echTel1|scaffold_318705 (2347-1300)
               

               
               1-573, gnl|hg17|chr2 (172575218-172576220)
               

               
               1-573, gnl|Hg17|chr2 (172576293-172575715)
               

               
               1-573, gnl|mm7|chr2 (71210233-71211223)
               

               
               1-573, gnl|Mm7|chr2 (71211296-71210726)
               

               
               1-573, gnl|monDom2|scaffold_2 (70627758-70628888)
               

               
               1-573, gnl|oryCun1|scaffold_198744 (42400-41392)
               

               
               1-573, gnl|panTro1|chr13 (62218123-62219125)
               

               
               1-573, gnl|rheMac2|chr12 (35532890-35533908)
               

               
               1-573, gnl|rn3|chr3 (53565696-53566685)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-573, gnl|bosTau2|chr2 (17774423-17774998)
               

               
               1-573, gnl|canFam2|chr36 (19306833-19307850)
               

               
               1-573, gnl|dasNov1|scaffold_73635 (1165-2144)
               

               
               1-573, gnl|echTel1|scaffold_318705 (2347-1300)
               

               
               1-573, gnl|hg17|chr2 (172575218-172576220)
               

               
               1-573, gnl|Hg17|chr2 (172576293-172575715)
               

               
               1-573, gnl|mm7|chr2 (71210233-71211223)
               

               
               1-573, gnl|Mm7|chr2 (71211296-71210726)
               

               
               1-573, gnl|monDom2|scaffold_2 (70627758-70628888)
               

               
               1-573, gnl|oryCun1|scaffold_198744 (42400-41392)
               

               
               1-573, gnl|panTro1|chr13 (62218123-62219125)
               

               
               1-573, gnl|rheMac2|chr12 (35532890-35533908)
               

               
               1-573, gnl|rn3|chr3 (53565696-53566685)

	1-573, gnl\|bosTau2\|chr2 (17774423-17774998)
	1-573, gnl\|canFam2\|chr36 (19306833-19307850)
	1-573, gnl\|dasNov1\|scaffold_73635 (1165-2144)
	1-573, gnl\|echTel1\|scaffold_318705 (2347-1300)
	1-573, gnl\|hg17\|chr2 (172575218-172576220)
	1-573, gnl\|Hg17\|chr2 (172576293-172575715)
	1-573, gnl\|mm7\|chr2 (71210233-71211223)
	1-573, gnl\|Mm7\|chr2 (71211296-71210726)
	1-573, gnl\|monDom2\|scaffold_2 (70627758-70628888)
	1-573, gnl\|oryCun1\|scaffold_198744 (42400-41392)
	1-573, gnl\|panTro1\|chr13 (62218123-62219125)
	1-573, gnl\|rheMac2\|chr12 (35532890-35533908)
	1-573, gnl\|rn3\|chr3 (53565696-53566685)