Non-Coding RNA Search

Ova1-OVRM10100H07

Sequence:


               
               ATTATAAGACAGGAAGAATTAAGAAATTTTGATCTAGTCAGGAAAGGAAATAGTCAGTAG
AAGTTCACCCAGATGCTGGAATTGACCAATGGGGAATTTAAATAACTGATAAAAGTGCTA
AAGAATCTGGAAGAAAAGGGGCCAACATGACGAGATGAGGAATTTTAGCAGAGACCTGAA
AACTAACAAAAAACCAAGTGGAAATGCTAGAAATTAAAATATATGTATATGTTGTATAGA
ATTAAAGGATTTATTAGATTGGCTAATTATTCAACAAATTAGATACAAATGAAGAAAAGT
TCAGTAGACTTGAAGGTAAGCCTATAGAGTTTCTGAACTAGAGGAGAGAGAGAGGAAAAA
AAGAAAACCCTTTTTCTACTCGCTATCCAAACACTTTTCCTGTTAACATGTGTTTTCTCT
TTGCTAAGACTGCTAATCTTAAAGTCAGAATTAGCGTCTAgggagttccctggtggctca
gaaggttaaggatccagcattgtcactgctgtggcatgagtttgatgcctggcctgggaa
tgtctgcatgctgtgggcatggccaaaaaaTTAGCATCTGGGCCGTAATTTTGACTAGTC
AGTCAGCTCTTCAAGGGCCAGAGAGCCTACAGATCCATGCTTCTTTCCCACAGAAAGAAC
TTGTAGACCACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTATAAGACAGGAAGAATTAAGAAATTTTGATCTAGTCAGGAAAGGAAATAGTCAGTAG
AAGTTCACCCAGATGCTGGAATTGACCAATGGGGAATTTAAATAACTGATAAAAGTGCTA
AAGAATCTGGAAGAAAAGGGGCCAACATGACGAGATGAGGAATTTTAGCAGAGACCTGAA
AACTAACAAAAAACCAAGTGGAAATGCTAGAAATTAAAATATATGTATATGTTGTATAGA
ATTAAAGGATTTATTAGATTGGCTAATTATTCAACAAATTAGATACAAATGAAGAAAAGT
TCAGTAGACTTGAAGGTAAGCCTATAGAGTTTCTGAACTAGAGGAGAGAGAGAGGAAAAA
AAGAAAACCCTTTTTCTACTCGCTATCCAAACACTTTTCCTGTTAACATGTGTTTTCTCT
TTGCTAAGACTGCTAATCTTAAAGTCAGAATTAGCGTCTAgggagttccctggtggctca
gaaggttaaggatccagcattgtcactgctgtggcatgagtttgatgcctggcctgggaa
tgtctgcatgctgtgggcatggccaaaaaaTTAGCATCTGGGCCGTAATTTTGACTAGTC
AGTCAGCTCTTCAAGGGCCAGAGAGCCTACAGATCCATGCTTCTTTCCCACAGAAAGAAC
TTGTAGACCACTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               234-367, + strand, RNAz p=0.919315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               234-367, + strand, RNAz p=0.919315

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

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               1-367, gnl|bosTau2|chr13 (34753397-34753038)
               

               
               1-367, gnl|canFam2|chr6 (55315812-55315621)
               

               
               1-367, gnl|dasNov1|scaffold_4896 (49431-49623)
               

               
               1-367, gnl|hg17|chr1 (97609892-97610127)
               

               
               1-367, gnl|Hg17|chr8 (20589160-20588789)
               

               
               1-367, gnl|loxAfr1|scaffold_60107 (8003-7897)
               

               
               1-367, gnl|panTro1|chr1_random (83304467-83304233)
               

               
               1-367, gnl|rheMac2|chr1 (100481284-100481521)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-367, gnl|bosTau2|chr13 (34753397-34753038)
               

               
               1-367, gnl|canFam2|chr6 (55315812-55315621)
               

               
               1-367, gnl|dasNov1|scaffold_4896 (49431-49623)
               

               
               1-367, gnl|hg17|chr1 (97609892-97610127)
               

               
               1-367, gnl|Hg17|chr8 (20589160-20588789)
               

               
               1-367, gnl|loxAfr1|scaffold_60107 (8003-7897)
               

               
               1-367, gnl|panTro1|chr1_random (83304467-83304233)
               

               
               1-367, gnl|rheMac2|chr1 (100481284-100481521)

	1-367, gnl\|bosTau2\|chr13 (34753397-34753038)
	1-367, gnl\|canFam2\|chr6 (55315812-55315621)
	1-367, gnl\|dasNov1\|scaffold_4896 (49431-49623)
	1-367, gnl\|hg17\|chr1 (97609892-97610127)
	1-367, gnl\|Hg17\|chr8 (20589160-20588789)
	1-367, gnl\|loxAfr1\|scaffold_60107 (8003-7897)
	1-367, gnl\|panTro1\|chr1_random (83304467-83304233)
	1-367, gnl\|rheMac2\|chr1 (100481284-100481521)