Non-Coding RNA Search

Ova1-OVRM10101C02

Sequence:


               
               TTTTTGGTACTTTGCCTTAGAGCCGTTGCACTTGCTTGAGGTCTGGTCAGTTGTTCTGTC
ATCTCTTCTCCCCTTACACTGTCATGTATTTCAGTAATTCTTGTACAGAGCAAATTAACC
CAGGCTGTGAAGGTGTCTCTCCTTTGCACAGAGCTAATGGGTGTTGGTTTGTCAAATGCC
ACATAGCAAGTTGCCCTTGAGGGATTTCTCAATGAGTTCTCCATGAAGGCTCCCTTCTCA
GATTTCTGACGTGAGAGATTGTCACGTCTCCCTGACTTGCACACTGGAGTGCTGAATTAA
AATTAAATAGACCATTTCTGTTTGATCCTTGTTTCTCCCACGTTGGCCATATCCTCCAGC
AACCCATGAAGTTATTTTGTGAGATGTTACTACAGAACAAAGCTGACAGGTTAGCTCACT
AAAGCACTTAGACATGAGTAGAGTATTATATTATACGCAAGGTATCTTTCTACAATCAAA
ATAAATTTAAGAGTTCCTAGTCGGATTCATTAACCACTGCGCCACGACGGGAACTCCTGA
CCGATGCTCTTGTCTGAATGGTGAGATTCCCACATCATCTGGGAATGACCTGTTGGGGTG
ATCAGCACAACTACACCTCTCACCCCTTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGGTACTTTGCCTTAGAGCCGTTGCACTTGCTTGAGGTCTGGTCAGTTGTTCTGTC
ATCTCTTCTCCCCTTACACTGTCATGTATTTCAGTAATTCTTGTACAGAGCAAATTAACC
CAGGCTGTGAAGGTGTCTCTCCTTTGCACAGAGCTAATGGGTGTTGGTTTGTCAAATGCC
ACATAGCAAGTTGCCCTTGAGGGATTTCTCAATGAGTTCTCCATGAAGGCTCCCTTCTCA
GATTTCTGACGTGAGAGATTGTCACGTCTCCCTGACTTGCACACTGGAGTGCTGAATTAA
AATTAAATAGACCATTTCTGTTTGATCCTTGTTTCTCCCACGTTGGCCATATCCTCCAGC
AACCCATGAAGTTATTTTGTGAGATGTTACTACAGAACAAAGCTGACAGGTTAGCTCACT
AAAGCACTTAGACATGAGTAGAGTATTATATTATACGCAAGGTATCTTTCTACAATCAAA
ATAAATTTAAGAGTTCCTAGTCGGATTCATTAACCACTGCGCCACGACGGGAACTCCTGA
CCGATGCTCTTGTCTGAATGGTGAGATTCCCACATCATCTGGGAATGACCTGTTGGGGTG
ATCAGCACAACTACACCTCTCACCCCTTCCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               245-388, - strand, RNAz p=0.964172

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               245-388, - strand, RNAz p=0.964172

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               3-388, gnl|bosTau2|chr10 (972524-972143)
               

               
               3-388, gnl|canFam2|chr3 (33066081-33065634)
               

               
               3-388, gnl|dasNov1|scaffold_808 (122061-122532)
               

               
               3-388, gnl|echTel1|scaffold_299055 (3871-4295)
               

               
               3-388, gnl|hg17|chr5 (75737515-75737977)
               

               
               3-388, gnl|Hg17|chr5 (75737584-75737964)
               

               
               3-388, gnl|loxAfr1|scaffold_20336 (20556-20121)
               

               
               3-388, gnl|mm7|chr13 (92958691-92958210)
               

               
               3-388, gnl|Mm7|chr13 (92958631-92958223)
               

               
               3-388, gnl|panTro1|chr4 (39692849-39692387)
               

               
               3-388, gnl|rheMac2|chr6 (72559862-72560328)
               

               
               3-388, gnl|rn3|chr2 (26181685-26181226)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-388, gnl|bosTau2|chr10 (972524-972143)
               

               
               3-388, gnl|canFam2|chr3 (33066081-33065634)
               

               
               3-388, gnl|dasNov1|scaffold_808 (122061-122532)
               

               
               3-388, gnl|echTel1|scaffold_299055 (3871-4295)
               

               
               3-388, gnl|hg17|chr5 (75737515-75737977)
               

               
               3-388, gnl|Hg17|chr5 (75737584-75737964)
               

               
               3-388, gnl|loxAfr1|scaffold_20336 (20556-20121)
               

               
               3-388, gnl|mm7|chr13 (92958691-92958210)
               

               
               3-388, gnl|Mm7|chr13 (92958631-92958223)
               

               
               3-388, gnl|panTro1|chr4 (39692849-39692387)
               

               
               3-388, gnl|rheMac2|chr6 (72559862-72560328)
               

               
               3-388, gnl|rn3|chr2 (26181685-26181226)

	3-388, gnl\|bosTau2\|chr10 (972524-972143)
	3-388, gnl\|canFam2\|chr3 (33066081-33065634)
	3-388, gnl\|dasNov1\|scaffold_808 (122061-122532)
	3-388, gnl\|echTel1\|scaffold_299055 (3871-4295)
	3-388, gnl\|hg17\|chr5 (75737515-75737977)
	3-388, gnl\|Hg17\|chr5 (75737584-75737964)
	3-388, gnl\|loxAfr1\|scaffold_20336 (20556-20121)
	3-388, gnl\|mm7\|chr13 (92958691-92958210)
	3-388, gnl\|Mm7\|chr13 (92958631-92958223)
	3-388, gnl\|panTro1\|chr4 (39692849-39692387)
	3-388, gnl\|rheMac2\|chr6 (72559862-72560328)
	3-388, gnl\|rn3\|chr2 (26181685-26181226)