Non-Coding RNA Search

Ova1-OVRM10104G10

Sequence:


               
               ATTTTACAGTTGAGGGCTCTTAGGAGCTCTTGTCCAGAGTCATGCTATGTTTCATATAGG
AGTTCTGAGCCAGCATTTTCTACTTTAAACTAATTCAGCATCAGCTGAAAAGGGCCCAGA
CAGCTGCTAGGCCAGGGGAACCTTAGATTAAGTAATGTGCTGTTTTGGTCTAGTCTCAGA
AAAACAGGCAGATTAATCCTAATTTACTTTCATGTGTACAAACAGATGGTGGTAGTTTAC
TAGGGAGAGGAAATGTTGAGAAAATTAACCCCGTTTCCTACCCAGTGTTGTGAAAAGGTG
AGAGAAATAGGAAGGAggagttcccatcgtggctcagtggaaactaatctgcctaggagc
catgaggttgagggtttgatccctggccttgctcagagggttagagatctagcattgctc
tgagcctgtggtataggttggagatgaggctcagatctgatgttgctacggatgtggtgt
aggcctgcagctacagctccgattggacccctagcctgggaacttccatgtgctgtgggt
gtagccctAAAAAGCAAAAAAAGAAAGAAAAGAAAAGAAATACATTTTGTAAATCTGTAG
CTAACtcctctgatggatctaggcaaagtaaattaaaaaccttttggaagggattcacca
ttctagatgtcgtttagaacattcgtgattcatggg

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTACAGTTGAGGGCTCTTAGGAGCTCTTGTCCAGAGTCATGCTATGTTTCATATAGG
AGTTCTGAGCCAGCATTTTCTACTTTAAACTAATTCAGCATCAGCTGAAAAGGGCCCAGA
CAGCTGCTAGGCCAGGGGAACCTTAGATTAAGTAATGTGCTGTTTTGGTCTAGTCTCAGA
AAAACAGGCAGATTAATCCTAATTTACTTTCATGTGTACAAACAGATGGTGGTAGTTTAC
TAGGGAGAGGAAATGTTGAGAAAATTAACCCCGTTTCCTACCCAGTGTTGTGAAAAGGTG
AGAGAAATAGGAAGGAggagttcccatcgtggctcagtggaaactaatctgcctaggagc
catgaggttgagggtttgatccctggccttgctcagagggttagagatctagcattgctc
tgagcctgtggtataggttggagatgaggctcagatctgatgttgctacggatgtggtgt
aggcctgcagctacagctccgattggacccctagcctgggaacttccatgtgctgtgggt
gtagccctAAAAAGCAAAAAAAGAAAGAAAAGAAAAGAAATACATTTTGTAAATCTGTAG
CTAACtcctctgatggatctaggcaaagtaaattaaaaaccttttggaagggattcacca
ttctagatgtcgtttagaacattcgtgattcatggg

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               91-200, - strand, RNAz p=0.999679
               

               
               97-206, - strand, RNAz p=0.910212

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-200, - strand, RNAz p=0.999679
               

               
               97-206, - strand, RNAz p=0.910212

Aligned organism(s): 8 entry(ies)

More info

Aligned organism(s): 8 entry(ies)

Help | Less info


               
               91-316, gnl|bosTau2|chr21 (8065447-8065674)
               

               
               91-316, gnl|canFam2|chr3 (50034636-50034379)
               

               
               91-316, gnl|hg17|chr15 (91295696-91295976)
               

               
               91-316, gnl|Hg17|chr15 (91295729-91295963)
               

               
               91-316, gnl|loxAfr1|scaffold_32617 (40034-40309)
               

               
               91-316, gnl|panTro1|chr16 (92268460-92268740)
               

               
               91-316, gnl|rheMac2|chr7 (72807513-72807791)
               


               
               575-692, gnl|bosTau2|chr9 (18187657-18187540)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-316, gnl|bosTau2|chr21 (8065447-8065674)
               

               
               91-316, gnl|canFam2|chr3 (50034636-50034379)
               

               
               91-316, gnl|hg17|chr15 (91295696-91295976)
               

               
               91-316, gnl|Hg17|chr15 (91295729-91295963)
               

               
               91-316, gnl|loxAfr1|scaffold_32617 (40034-40309)
               

               
               91-316, gnl|panTro1|chr16 (92268460-92268740)
               

               
               91-316, gnl|rheMac2|chr7 (72807513-72807791)
               


               
               575-692, gnl|bosTau2|chr9 (18187657-18187540)

	91-200, - strand, RNAz p=0.999679
	97-206, - strand, RNAz p=0.910212

	91-316, gnl\|bosTau2\|chr21 (8065447-8065674)
	91-316, gnl\|canFam2\|chr3 (50034636-50034379)
	91-316, gnl\|hg17\|chr15 (91295696-91295976)
	91-316, gnl\|Hg17\|chr15 (91295729-91295963)
	91-316, gnl\|loxAfr1\|scaffold_32617 (40034-40309)
	91-316, gnl\|panTro1\|chr16 (92268460-92268740)
	91-316, gnl\|rheMac2\|chr7 (72807513-72807791)

	575-692, gnl\|bosTau2\|chr9 (18187657-18187540)