Non-Coding RNA Search

Ova1-OVRM10105E07

Sequence:


               
               TTTTTTCCTGGTTGGGAGGTTTTCCAAAAGCACCCCAACATTCTTCATCATCAGGAATGA
AGATCTCCCTCCACTAGTGACAAGTTCCTGGTTGAACCTCACTCATAGCCTTCATACCAA
AACCTATAGGATTCAGCAGTAGCACTGCTAGGAATTAAAACACTTAGATTTGAAAAAAGA
AAGATCTCAAATCAATAACAATCTTTTTTTAAGTTTTATTGAAGTATATTTGATTTACAG
GGTTATGACAGTTTCTGGGGTATAGCAAAGTGATTCAGTCATACATATACACATATCCAT
TCTCTTTCAGATTCTTTTCCTACATAGAATATCACAGAATATTGGGCAGAGTTTCCTGTG
CTATGTAGCAGGTCTCTATTGGCCAGTCATTCCATATACCACAGTGTGCACATGCTGATT
CCAAACCCCCAGTCCACCCTCCCAAAAATACCTGTCCCCTTTGGTATCCATAAGTTCCTG
TTCAAAGTCTGTGAATCTGTTACTGTTCTGCAAGTAAGTTCATTTGTATCctttttaaag
attccacatataagtgatatcctatgatgtttgtctttcactgtctgactaacttcacat
agtataatagtttttaggtccatccatgttgctgcacatcatactgtttcattctttttt
atggctgagtaatattccattgtttatatgtatcacatctttatcaattcctctgttgat
ggacatttangttgctttcatgt

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCCTGGTTGGGAGGTTTTCCAAAAGCACCCCAACATTCTTCATCATCAGGAATGA
AGATCTCCCTCCACTAGTGACAAGTTCCTGGTTGAACCTCACTCATAGCCTTCATACCAA
AACCTATAGGATTCAGCAGTAGCACTGCTAGGAATTAAAACACTTAGATTTGAAAAAAGA
AAGATCTCAAATCAATAACAATCTTTTTTTAAGTTTTATTGAAGTATATTTGATTTACAG
GGTTATGACAGTTTCTGGGGTATAGCAAAGTGATTCAGTCATACATATACACATATCCAT
TCTCTTTCAGATTCTTTTCCTACATAGAATATCACAGAATATTGGGCAGAGTTTCCTGTG
CTATGTAGCAGGTCTCTATTGGCCAGTCATTCCATATACCACAGTGTGCACATGCTGATT
CCAAACCCCCAGTCCACCCTCCCAAAAATACCTGTCCCCTTTGGTATCCATAAGTTCCTG
TTCAAAGTCTGTGAATCTGTTACTGTTCTGCAAGTAAGTTCATTTGTATCctttttaaag
attccacatataagtgatatcctatgatgtttgtctttcactgtctgactaacttcacat
agtataatagtttttaggtccatccatgttgctgcacatcatactgtttcattctttttt
atggctgagtaatattccattgtttatatgtatcacatctttatcaattcctctgttgat
ggacatttangttgctttcatgt

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26332577|dbj|BAC30006.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26332577|dbj|BAC30006.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               205-324, + strand, RNAz p=0.74429

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-324, + strand, RNAz p=0.74429

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               205-743, gnl|bosTau2|chr10 (16598875-16598343)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               205-743, gnl|bosTau2|chr10 (16598875-16598343)