Non-Coding RNA Search

Ova1-OVRM10106D08

Sequence:


               
               ATTGCACCGCGGCGAAGCCTTCCCGCCTCGCAGCGGCCCCCTGCCCCCCGGCCTGCAGGC
TCCCAGCGCGCCCGCGCCCCCACCACGCCCCTCCGACTCCCGCTCCCTCCGAGGTGTGAG
CGTGTCGGGCAGATGCGGTGATCTCCGGCCGGCCTGGGAGGAGCGCGTGGACCAGCGGGC
GGCGGCGAGCAGTTGGCAAGCGCCTTTACAATGGCCCTGACCCTGTTTGATACAGATGAA
TATAGACCTCCTGTTTGGAAATCTTACTTATATCAACTGCAGCAGGAAGCCCCTCATCCT
CGGAGAATTACCTGTACTAATGAGGTAGAAAACAGACCAAAGTATTATGGAAGAGAGTTT
CACGGCATGATCTCCCGAGAAGCAGCAGACCAGCTCTTGAGTGTAGCTGAGGGGAGCTAC
CTCATTCGGGAGAGCCAGCGTCAGCCGGGAACCTACACTTTGGCTTTAAGGTTGGTCATG
GACCTGTAATTATAACTGTGCTTCATTTAAAACCCTCTTAATAGAGGGCTTTAAATTTTA
AAAGCATCCAGCATGTAATTGAATTGGTTCTTGTTTTCTTGGGACCTAATTACCATTTTA
ATAGCTCTGAGACTCTTAAAAAATTCCTCATGAATGGTAGCACTCAGTAATTAAGAATTG
AAAAACTTTTAAAGCATTTTTATTGTAGCTGCTTTCGTCTATTTCATCTTGCCCTGTTCT
CTCCCATCTGTCCTGCTGTGTCAGCTCCCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCACCGCGGCGAAGCCTTCCCGCCTCGCAGCGGCCCCCTGCCCCCCGGCCTGCAGGC
TCCCAGCGCGCCCGCGCCCCCACCACGCCCCTCCGACTCCCGCTCCCTCCGAGGTGTGAG
CGTGTCGGGCAGATGCGGTGATCTCCGGCCGGCCTGGGAGGAGCGCGTGGACCAGCGGGC
GGCGGCGAGCAGTTGGCAAGCGCCTTTACAATGGCCCTGACCCTGTTTGATACAGATGAA
TATAGACCTCCTGTTTGGAAATCTTACTTATATCAACTGCAGCAGGAAGCCCCTCATCCT
CGGAGAATTACCTGTACTAATGAGGTAGAAAACAGACCAAAGTATTATGGAAGAGAGTTT
CACGGCATGATCTCCCGAGAAGCAGCAGACCAGCTCTTGAGTGTAGCTGAGGGGAGCTAC
CTCATTCGGGAGAGCCAGCGTCAGCCGGGAACCTACACTTTGGCTTTAAGGTTGGTCATG
GACCTGTAATTATAACTGTGCTTCATTTAAAACCCTCTTAATAGAGGGCTTTAAATTTTA
AAAGCATCCAGCATGTAATTGAATTGGTTCTTGTTTTCTTGGGACCTAATTACCATTTTA
ATAGCTCTGAGACTCTTAAAAAATTCCTCATGAATGGTAGCACTCAGTAATTAAGAATTG
AAAAACTTTTAAAGCATTTTTATTGTAGCTGCTTTCGTCTATTTCATCTTGCCCTGTTCT
CTCCCATCTGTCCTGCTGTGTCAGCTCCCATCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               357-596, + strand, RNAz p=0.958544

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               357-596, + strand, RNAz p=0.958544

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               452-597, - strand, RNAmicro p=0.999939

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               452-597, - strand, RNAmicro p=0.999939

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               102-232, gnl|bosTau2|chr2 (14982693-14982562)
               

               
               102-232, gnl|Hg17|chr2 (175695245-175695126)
               

               
               102-232, gnl|Mm7|chr2 (73618867-73618736)
               


               
               357-753, gnl|bosTau2|chr2 (14909078-14908692)
               

               
               357-753, gnl|Hg17|chr2 (175605406-175604708)
               

               
               357-753, gnl|Mm7|chr2 (73550748-73550395)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               102-232, gnl|bosTau2|chr2 (14982693-14982562)
               

               
               102-232, gnl|Hg17|chr2 (175695245-175695126)
               

               
               102-232, gnl|Mm7|chr2 (73618867-73618736)
               


               
               357-753, gnl|bosTau2|chr2 (14909078-14908692)
               

               
               357-753, gnl|Hg17|chr2 (175605406-175604708)
               

               
               357-753, gnl|Mm7|chr2 (73550748-73550395)

	102-232, gnl\|bosTau2\|chr2 (14982693-14982562)
	102-232, gnl\|Hg17\|chr2 (175695245-175695126)
	102-232, gnl\|Mm7\|chr2 (73618867-73618736)

	357-753, gnl\|bosTau2\|chr2 (14909078-14908692)
	357-753, gnl\|Hg17\|chr2 (175605406-175604708)
	357-753, gnl\|Mm7\|chr2 (73550748-73550395)