Non-Coding RNA Search

Ova1-OVRM10106G09

Sequence:


               
               TGCAGATGCCGCTGGAAGCCCCAGTAGTGACTCTCCTACCAATCATTTTTTTCCTGATGG
AGTAGATTTCAATCCTGATTTGTTGAACAGTCAGAGCCAAAGTGGTTTTGGAGAAGAATA
TTTTGATGAAAGCAGCCAAAGTGGAGATAATGATGATTTCAAAGGATTTGCATCTCAGGC
ACTAAATACTTTGGGGGTGCCAATGCTGGGAGGCGATAACGGGGAGAGTAAGTTTAAAAG
CAATAGCCAAGCTGACACAGTTGATTTCAGTATTATAGCAGTGGCTGGTAAGGCTTTGGG
TCCTGCAGATCTTATGGAGCATCACAGTGGTAGTCAGAGTCCTTTACTGACCACTGGGGA
CTTAGGGAAAGAAAAGACTCAAAAGAGAGTAAAAGAAGGCAATGGCACCAGTAATAGTAG
TCTGTCAGGGCCAGGATTAGACAGCAAACCAGGGAAGCGCAGTCGGACCCCTTCTAATGA
TGGCAAAAACAAAGATAAGCCTCCAAAACGGAAGAAGGCAGACACTGAGGGGAAGTCTCC
TTCTCATAGTTCTTCTAACCGACCTTTCACCCCACCTACTAGTACAGGTGGATCTAAATC
TCCAGGCAGTTCAGGAAGATCTCAGACTCCCCCAGGTGTTGCCACACCACCCATTCCTAA
AATCACTATTCAGATTCCTAAGGGAACCGTGATGGTGGGTAAACCCTCCTCTCACAGTCA
GTATACCAGCAGTGGTTCTGTGTCTTCCTCANGAAGTAAAGCCACCATAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGATGCCGCTGGAAGCCCCAGTAGTGACTCTCCTACCAATCATTTTTTTCCTGATGG
AGTAGATTTCAATCCTGATTTGTTGAACAGTCAGAGCCAAAGTGGTTTTGGAGAAGAATA
TTTTGATGAAAGCAGCCAAAGTGGAGATAATGATGATTTCAAAGGATTTGCATCTCAGGC
ACTAAATACTTTGGGGGTGCCAATGCTGGGAGGCGATAACGGGGAGAGTAAGTTTAAAAG
CAATAGCCAAGCTGACACAGTTGATTTCAGTATTATAGCAGTGGCTGGTAAGGCTTTGGG
TCCTGCAGATCTTATGGAGCATCACAGTGGTAGTCAGAGTCCTTTACTGACCACTGGGGA
CTTAGGGAAAGAAAAGACTCAAAAGAGAGTAAAAGAAGGCAATGGCACCAGTAATAGTAG
TCTGTCAGGGCCAGGATTAGACAGCAAACCAGGGAAGCGCAGTCGGACCCCTTCTAATGA
TGGCAAAAACAAAGATAAGCCTCCAAAACGGAAGAAGGCAGACACTGAGGGGAAGTCTCC
TTCTCATAGTTCTTCTAACCGACCTTTCACCCCACCTACTAGTACAGGTGGATCTAAATC
TCCAGGCAGTTCAGGAAGATCTCAGACTCCCCCAGGTGTTGCCACACCACCCATTCCTAA
AATCACTATTCAGATTCCTAAGGGAACCGTGATGGTGGGTAAACCCTCCTCTCACAGTCA
GTATACCAGCAGTGGTTCTGTGTCTTCCTCANGAAGTAAAGCCACCATAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               41-160, - strand, RNAz p=0.706605
               

               
               521-720, - strand, RNAz p=0.755604

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, - strand, RNAz p=0.706605
               

               
               521-720, - strand, RNAz p=0.755604

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-770, gnl|bosTau2|chr19 (32929850-32929083)
               

               
               1-770, gnl|Hg17|chr17 (34819474-34818704)
               

               
               1-770, gnl|Mm7|chr11 (98266482-98265712)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-770, gnl|bosTau2|chr19 (32929850-32929083)
               

               
               1-770, gnl|Hg17|chr17 (34819474-34818704)
               

               
               1-770, gnl|Mm7|chr11 (98266482-98265712)

	41-160, - strand, RNAz p=0.706605
	521-720, - strand, RNAz p=0.755604

	1-770, gnl\|bosTau2\|chr19 (32929850-32929083)
	1-770, gnl\|Hg17\|chr17 (34819474-34818704)
	1-770, gnl\|Mm7\|chr11 (98266482-98265712)