Non-Coding RNA Search

Ova1-OVRM10109A11

Sequence:


               
               CAGATGGATGCTTTCGCAAGACGATGGCTTGTCTTCTTGCTCTATTTGTGAAAGCTGGCA
TTGGATCCAAACTCTCAAGGATGTCCCTACCTTGAGGTTGCTTTGGGAGAGTTGTTCTTT
TGTGTGTTTTGGCCAAATGGCCTGCCCATCAGCAGGACCAGGTTGAATGACAGGTGGGTG
TGCCACGCATGTGGACTCTGATCCCTGCCAAGTCATTTTGCCTGCAAGGAGGTGAGGTGC
TGAGAGGTTATTCTATACAGAGATGTCATTTATCAGTGTTACCTTCCTTCGAGCCCATAA
ACTTCTGATCTGTCAATCTTTCTCTCTGACCGCATGTATTTTCCCAGCAATTACATTGTA
ATCAATGTCACATTACCACTGTATCAGGTTAAGATGCATACACATTATGCCATCTTAAAG
AAGCAACTTTTAGATCAATGAAGAGTATAGAATGGCAATTACAGTTAACGTAATTGGTGC
TAGATTAATCAGGGCGGGAAGGTACTCTGAATAGAAAAGAATAAGCGAATATTAATAAAT
TTGTAACAAATAAATTGCTAATTTATTTATTGTTTCATTTCTGACTCAGTTCTTTGTGTG
CTCCATGTCATTTAATTGTCACAACAATTAGAATAGATTAATTACCAATTTATTAGATTT
TTCTATTGTTCACATGAGGGGACTTGGCGGAGGGCAGAGAACCGCTCCATGTCAGGTCTG
TGTACCACACATGGCTGCTCACAGCTCTGTTCTCANGCTTGGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATGGATGCTTTCGCAAGACGATGGCTTGTCTTCTTGCTCTATTTGTGAAAGCTGGCA
TTGGATCCAAACTCTCAAGGATGTCCCTACCTTGAGGTTGCTTTGGGAGAGTTGTTCTTT
TGTGTGTTTTGGCCAAATGGCCTGCCCATCAGCAGGACCAGGTTGAATGACAGGTGGGTG
TGCCACGCATGTGGACTCTGATCCCTGCCAAGTCATTTTGCCTGCAAGGAGGTGAGGTGC
TGAGAGGTTATTCTATACAGAGATGTCATTTATCAGTGTTACCTTCCTTCGAGCCCATAA
ACTTCTGATCTGTCAATCTTTCTCTCTGACCGCATGTATTTTCCCAGCAATTACATTGTA
ATCAATGTCACATTACCACTGTATCAGGTTAAGATGCATACACATTATGCCATCTTAAAG
AAGCAACTTTTAGATCAATGAAGAGTATAGAATGGCAATTACAGTTAACGTAATTGGTGC
TAGATTAATCAGGGCGGGAAGGTACTCTGAATAGAAAAGAATAAGCGAATATTAATAAAT
TTGTAACAAATAAATTGCTAATTTATTTATTGTTTCATTTCTGACTCAGTTCTTTGTGTG
CTCCATGTCATTTAATTGTCACAACAATTAGAATAGATTAATTACCAATTTATTAGATTT
TTCTATTGTTCACATGAGGGGACTTGGCGGAGGGCAGAGAACCGCTCCATGTCAGGTCTG
TGTACCACACATGGCTGCTCACAGCTCTGTTCTCANGCTTGGCGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-227, + strand, RNAz p=0.903453

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-227, + strand, RNAz p=0.903453

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-569, gnl|bosTau2|chr6 (36567753-36567157)
               

               
               1-569, gnl|Hg17|chr4 (55428530-55429086)
               

               
               1-569, gnl|Mm7|chr5 (75053694-75054392)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-569, gnl|bosTau2|chr6 (36567753-36567157)
               

               
               1-569, gnl|Hg17|chr4 (55428530-55429086)
               

               
               1-569, gnl|Mm7|chr5 (75053694-75054392)

	1-569, gnl\|bosTau2\|chr6 (36567753-36567157)
	1-569, gnl\|Hg17\|chr4 (55428530-55429086)
	1-569, gnl\|Mm7\|chr5 (75053694-75054392)