Non-Coding RNA Search

Ova1-OVRM10110B05

Sequence:


               
               CTATTCTGGGCCTCTGTTTCCTCAGTGGGCAAATGAGAGGTATAGTTCTTACTATACGGG
GTTTTGTGAGAATTAAATGGAATTATGCATATAAAGCAATTAGCTTTGTCCCTGGCCATG
TAGTAATCACTAAATTAATGTGGTGAGGGGAAAAATAATTAGGACTTTTGCTCTGTTCAG
ACAAGCGGTGAGTAATCCACAGATCCCTTAATGGCTGTGGTTTGCAACCTTGGTCTTACA
TTAGAATTAACCTGGGGATCTTTTATAAGTTCCAGTGGCCGGGCTGCTCCCCAGACTGAT
TATGTTAGAATCTCAGTGGATGGAACCCAGATTTTAGTAGTTTCTGAAGCTGCCCAGGTA
ATTTCAGTGGGCATCCAAGACTGTGAACCTGCCTGGTGGCCTCCCTTGCCTCTTTTTGAT
GGAACACAAAGCCTGTGGGACAGAATGAGATAGGAGGATAGAGGGATGGAGGAATGAAGA
CATGGCAGGAAAGCTCTTGCTTATCAGGCCCGGGCTGTGTCAGGCACTGTGCATGTTTTT
CACCATGAACTTGTGACACACGAATTATTGCCCTGCTTCTTGCGTGGGTCTCAGGAAGGA
TGAGTGGCTTGTTTAAAGTCAGGTATCAGCTGGCTTAAGGATGAAGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATTCTGGGCCTCTGTTTCCTCAGTGGGCAAATGAGAGGTATAGTTCTTACTATACGGG
GTTTTGTGAGAATTAAATGGAATTATGCATATAAAGCAATTAGCTTTGTCCCTGGCCATG
TAGTAATCACTAAATTAATGTGGTGAGGGGAAAAATAATTAGGACTTTTGCTCTGTTCAG
ACAAGCGGTGAGTAATCCACAGATCCCTTAATGGCTGTGGTTTGCAACCTTGGTCTTACA
TTAGAATTAACCTGGGGATCTTTTATAAGTTCCAGTGGCCGGGCTGCTCCCCAGACTGAT
TATGTTAGAATCTCAGTGGATGGAACCCAGATTTTAGTAGTTTCTGAAGCTGCCCAGGTA
ATTTCAGTGGGCATCCAAGACTGTGAACCTGCCTGGTGGCCTCCCTTGCCTCTTTTTGAT
GGAACACAAAGCCTGTGGGACAGAATGAGATAGGAGGATAGAGGGATGGAGGAATGAAGA
CATGGCAGGAAAGCTCTTGCTTATCAGGCCCGGGCTGTGTCAGGCACTGTGCATGTTTTT
CACCATGAACTTGTGACACACGAATTATTGCCCTGCTTCTTGCGTGGGTCTCAGGAAGGA
TGAGTGGCTTGTTTAAAGTCAGGTATCAGCTGGCTTAAGGATGAAGGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               41-160, + strand, RNAz p=0.805825

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-160, + strand, RNAz p=0.805825

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-424, gnl|bosTau2|chr21 (14246047-14245628)
               

               
               1-424, gnl|canFam2|chr3 (54219676-54219941)
               

               
               1-424, gnl|hg17|chr15 (86453886-86454230)
               

               
               1-424, gnl|Hg17|chr15 (86454283-86453885)
               

               
               1-424, gnl|mm7|chr7 (74292698-74293035)
               

               
               1-424, gnl|panTro1|chr16 (87302716-87303060)
               

               
               1-424, gnl|rheMac2|chr7 (67725141-67725488)
               

               
               1-424, gnl|rn3|chr1 (134231030-134231369)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-424, gnl|bosTau2|chr21 (14246047-14245628)
               

               
               1-424, gnl|canFam2|chr3 (54219676-54219941)
               

               
               1-424, gnl|hg17|chr15 (86453886-86454230)
               

               
               1-424, gnl|Hg17|chr15 (86454283-86453885)
               

               
               1-424, gnl|mm7|chr7 (74292698-74293035)
               

               
               1-424, gnl|panTro1|chr16 (87302716-87303060)
               

               
               1-424, gnl|rheMac2|chr7 (67725141-67725488)
               

               
               1-424, gnl|rn3|chr1 (134231030-134231369)

	1-424, gnl\|bosTau2\|chr21 (14246047-14245628)
	1-424, gnl\|canFam2\|chr3 (54219676-54219941)
	1-424, gnl\|hg17\|chr15 (86453886-86454230)
	1-424, gnl\|Hg17\|chr15 (86454283-86453885)
	1-424, gnl\|mm7\|chr7 (74292698-74293035)
	1-424, gnl\|panTro1\|chr16 (87302716-87303060)
	1-424, gnl\|rheMac2\|chr7 (67725141-67725488)
	1-424, gnl\|rn3\|chr1 (134231030-134231369)