Non-Coding RNA Search

Ova1-OVRM10114G05

Sequence:


               
               ATCTTAAACCAAACTCTTAACTACCCAGGATTTCCCTTCTTCAGCAGAACTCTTTTGCAA
ACGGAAGAGCCCTTTACAAAGCAAATCGTGATCCCCTTTGCAGGACGACTTTTTTTCTTT
TTTGTCCTCCCTAACATGGAAAACACTCTCTGATCCCTGCCCTCCCTCTCTCCACCCCCC
TCCCCCCTGCATGCAGACTAAGAGTCTCTGGTTTTAATATAGCCAGTTCTGTAATTATTT
GTCTTCTTTGCAGATTAGGAGACTGAAACATTGCAGCCACTCACCGCAGGTTCCCACTTG
GCCCCAGTGAATAGAGCAACGCCCCACCATCCTTCTCCCCGTGGCCAGCAGCCTCAAGTC
CCACAATATCTCTGCCTTGGCACGGGGAGCTGACATTGTTCGCATAGCGTACATTTCTGG
ACAATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTTAAACCAAACTCTTAACTACCCAGGATTTCCCTTCTTCAGCAGAACTCTTTTGCAA
ACGGAAGAGCCCTTTACAAAGCAAATCGTGATCCCCTTTGCAGGACGACTTTTTTTCTTT
TTTGTCCTCCCTAACATGGAAAACACTCTCTGATCCCTGCCCTCCCTCTCTCCACCCCCC
TCCCCCCTGCATGCAGACTAAGAGTCTCTGGTTTTAATATAGCCAGTTCTGTAATTATTT
GTCTTCTTTGCAGATTAGGAGACTGAAACATTGCAGCCACTCACCGCAGGTTCCCACTTG
GCCCCAGTGAATAGAGCAACGCCCCACCATCCTTCTCCCCGTGGCCAGCAGCCTCAAGTC
CCACAATATCTCTGCCTTGGCACGGGGAGCTGACATTGTTCGCATAGCGTACATTTCTGG
ACAATGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-158, - strand, RNAz p=0.940516

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, - strand, RNAz p=0.940516

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-428, gnl|bosTau2|chr3 (53032383-53032798)
               

               
               1-428, gnl|dasNov1|scaffold_182458 (1237-737)
               

               
               1-428, gnl|echTel1|scaffold_312171 (136231-136743)
               

               
               1-428, gnl|hg17|chr1 (67925402-67925930)
               

               
               1-428, gnl|Hg17|chr1 (67925988-67925573)
               

               
               1-428, gnl|loxAfr1|scaffold_33933 (13024-12503)
               

               
               1-428, gnl|mm7|chr6 (66954319-66953827)
               

               
               1-428, gnl|oryCun1|scaffold_192268 (53914-53359)
               

               
               1-428, gnl|panTro1|chr1 (66293034-66293562)
               

               
               1-428, gnl|rheMac2|chr1 (70535277-70535806)
               

               
               1-428, gnl|rn3|chr4 (96831469-96830974)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-428, gnl|bosTau2|chr3 (53032383-53032798)
               

               
               1-428, gnl|dasNov1|scaffold_182458 (1237-737)
               

               
               1-428, gnl|echTel1|scaffold_312171 (136231-136743)
               

               
               1-428, gnl|hg17|chr1 (67925402-67925930)
               

               
               1-428, gnl|Hg17|chr1 (67925988-67925573)
               

               
               1-428, gnl|loxAfr1|scaffold_33933 (13024-12503)
               

               
               1-428, gnl|mm7|chr6 (66954319-66953827)
               

               
               1-428, gnl|oryCun1|scaffold_192268 (53914-53359)
               

               
               1-428, gnl|panTro1|chr1 (66293034-66293562)
               

               
               1-428, gnl|rheMac2|chr1 (70535277-70535806)
               

               
               1-428, gnl|rn3|chr4 (96831469-96830974)

	1-428, gnl\|bosTau2\|chr3 (53032383-53032798)
	1-428, gnl\|dasNov1\|scaffold_182458 (1237-737)
	1-428, gnl\|echTel1\|scaffold_312171 (136231-136743)
	1-428, gnl\|hg17\|chr1 (67925402-67925930)
	1-428, gnl\|Hg17\|chr1 (67925988-67925573)
	1-428, gnl\|loxAfr1\|scaffold_33933 (13024-12503)
	1-428, gnl\|mm7\|chr6 (66954319-66953827)
	1-428, gnl\|oryCun1\|scaffold_192268 (53914-53359)
	1-428, gnl\|panTro1\|chr1 (66293034-66293562)
	1-428, gnl\|rheMac2\|chr1 (70535277-70535806)
	1-428, gnl\|rn3\|chr4 (96831469-96830974)