Non-Coding RNA Search

Ova1-OVRM10119C02

Sequence:


               
               CATTTATCTGGGCTTTCCCAGCTGCCCTATTATTTGTTCTCTTCTGAACATCTCAGTACT
GTGGTTATCTTTGCTTAGGACATGGTGGTACCTGGCCCTACTAATTGAAATGNACACAGA
ACACGATGATAGGGACTAGGACCTGGAACCCAAAGTAGTTTCCTAGGGCTTGGACAGCAC
TGGGACAATAAGATCAACTTCAGGAACTGGAAGGAACCTCAGTCCAGACCCACTCATGGC
CACTTGTGTATAACAGGCAGTCACTCATCCCGTGTACCCTCTGCCCTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTATCTGGGCTTTCCCAGCTGCCCTATTATTTGTTCTCTTCTGAACATCTCAGTACT
GTGGTTATCTTTGCTTAGGACATGGTGGTACCTGGCCCTACTAATTGAAATGNACACAGA
ACACGATGATAGGGACTAGGACCTGGAACCCAAAGTAGTTTCCTAGGGCTTGGACAGCAC
TGGGACAATAAGATCAACTTCAGGAACTGGAAGGAACCTCAGTCCAGACCCACTCATGGC
CACTTGTGTATAACAGGCAGTCACTCATCCCGTGTACCCTCTGCCCTCTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-105, - strand, RNAz p=0.874913

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-105, - strand, RNAz p=0.874913

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-289, gnl|bosTau2|chr1 (64352347-64352053)
               

               
               1-289, gnl|canFam2|chr34 (39407235-39407851)
               

               
               1-289, gnl|dasNov1|scaffold_94658 (7299-7901)
               

               
               1-289, gnl|echTel1|scaffold_311077 (160933-160436)
               

               
               1-289, gnl|hg17|chr3 (173335786-173336406)
               

               
               1-289, gnl|Hg17|chr3 (173336005-173336308)
               

               
               1-289, gnl|loxAfr1|scaffold_14469 (37998-38545)
               

               
               1-289, gnl|mm7|chr3 (27434424-27433825)
               

               
               1-289, gnl|Mm7|chr3 (27434218-27433908)
               

               
               1-289, gnl|panTro1|chr2 (176863821-176864441)
               

               
               1-289, gnl|rheMac2|chr2 (114901524-114900900)
               

               
               1-289, gnl|rn3|chr2 (113479686-113479146)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-289, gnl|bosTau2|chr1 (64352347-64352053)
               

               
               1-289, gnl|canFam2|chr34 (39407235-39407851)
               

               
               1-289, gnl|dasNov1|scaffold_94658 (7299-7901)
               

               
               1-289, gnl|echTel1|scaffold_311077 (160933-160436)
               

               
               1-289, gnl|hg17|chr3 (173335786-173336406)
               

               
               1-289, gnl|Hg17|chr3 (173336005-173336308)
               

               
               1-289, gnl|loxAfr1|scaffold_14469 (37998-38545)
               

               
               1-289, gnl|mm7|chr3 (27434424-27433825)
               

               
               1-289, gnl|Mm7|chr3 (27434218-27433908)
               

               
               1-289, gnl|panTro1|chr2 (176863821-176864441)
               

               
               1-289, gnl|rheMac2|chr2 (114901524-114900900)
               

               
               1-289, gnl|rn3|chr2 (113479686-113479146)

	1-289, gnl\|bosTau2\|chr1 (64352347-64352053)
	1-289, gnl\|canFam2\|chr34 (39407235-39407851)
	1-289, gnl\|dasNov1\|scaffold_94658 (7299-7901)
	1-289, gnl\|echTel1\|scaffold_311077 (160933-160436)
	1-289, gnl\|hg17\|chr3 (173335786-173336406)
	1-289, gnl\|Hg17\|chr3 (173336005-173336308)
	1-289, gnl\|loxAfr1\|scaffold_14469 (37998-38545)
	1-289, gnl\|mm7\|chr3 (27434424-27433825)
	1-289, gnl\|Mm7\|chr3 (27434218-27433908)
	1-289, gnl\|panTro1\|chr2 (176863821-176864441)
	1-289, gnl\|rheMac2\|chr2 (114901524-114900900)
	1-289, gnl\|rn3\|chr2 (113479686-113479146)