Non-Coding RNA Search

Ova1-OVRM10120A09

Sequence:


               
               TTCTTGTTTATAGCCATGTGTAAGTATACAAAAAATGCTCATGTTCTGAGGATATAAGAA
CATACACATTAGGTTACAATCCGTGGATTAGCTAGCAATGGAAGTAGCTTAAGTAAGAGA
AGGAAAAGAGGGAGTCTGTTACACAGGAGTACCTTATTCCATTCACGGTCAGGGATTGTC
TGGTACTTGGGAATGGCTTACACTCTGAACCTGGAAAACCACTGGGACTTTCTCCCTCCC
TCTTGCCTTAGCTTTTTAGTATTTGTAAATTCTGAAGTTTTCTGGAGGATAGCTTTCATG
TGGAAGAAAATATAAATAACCCCTAGCTTCTTCTGAAGTACCAGCCACCCACAGAGACTG
ACTGGCTGGCTCTTATTCACAGCTCCACATTCCCCAGAAAGAGAGTTCACTTTGCCAGGG
CTGAATAGCTGACTGCACTTGGCCAATGAGTGGAGATTTGATTCTCTGTCAAAACATGGC
TGCTGAGGTCTCCCCTTGGAGATCTGGCAGGAAGCTTCCTGAGAAAAGTGTTGGCTTTCT
GGGCTTGGCAGACAATCCAAAAGATGTCCAACATAATAAGGAAAAAGCAATCCAGGATTT
AGACACTCATCTCCTAGACTCTAACCAGGAAATATTAGCGTAGGGAGTCTTCATTTTTTG
TTCATGTCATTAGGGGCTGAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTTGTTTATAGCCATGTGTAAGTATACAAAAAATGCTCATGTTCTGAGGATATAAGAA
CATACACATTAGGTTACAATCCGTGGATTAGCTAGCAATGGAAGTAGCTTAAGTAAGAGA
AGGAAAAGAGGGAGTCTGTTACACAGGAGTACCTTATTCCATTCACGGTCAGGGATTGTC
TGGTACTTGGGAATGGCTTACACTCTGAACCTGGAAAACCACTGGGACTTTCTCCCTCCC
TCTTGCCTTAGCTTTTTAGTATTTGTAAATTCTGAAGTTTTCTGGAGGATAGCTTTCATG
TGGAAGAAAATATAAATAACCCCTAGCTTCTTCTGAAGTACCAGCCACCCACAGAGACTG
ACTGGCTGGCTCTTATTCACAGCTCCACATTCCCCAGAAAGAGAGTTCACTTTGCCAGGG
CTGAATAGCTGACTGCACTTGGCCAATGAGTGGAGATTTGATTCTCTGTCAAAACATGGC
TGCTGAGGTCTCCCCTTGGAGATCTGGCAGGAAGCTTCCTGAGAAAAGTGTTGGCTTTCT
GGGCTTGGCAGACAATCCAAAAGATGTCCAACATAATAAGGAAAAAGCAATCCAGGATTT
AGACACTCATCTCCTAGACTCTAACCAGGAAATATTAGCGTAGGGAGTCTTCATTTTTTG
TTCATGTCATTAGGGGCTGAATTA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               21-139, - strand, RNAz p=0.714866
               

               
               278-510, + strand, RNAz p=0.861676
               

               
               287-399, - strand, RNAz p=0.568868
               

               
               477-585, - strand, RNAz p=0.961069

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-139, - strand, RNAz p=0.714866
               

               
               278-510, + strand, RNAz p=0.861676
               

               
               287-399, - strand, RNAz p=0.568868
               

               
               477-585, - strand, RNAz p=0.961069

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               21-684, gnl|bosTau2|chr22 (26811871-26811212)
               

               
               21-684, gnl|canFam2|chr20 (28528515-28527926)
               

               
               21-684, gnl|dasNov1|scaffold_286 (36667-36066)
               

               
               21-684, gnl|hg17|chr3 (65771957-65772580)
               

               
               21-684, gnl|Hg17|chr3 (65772641-65771959)
               

               
               21-684, gnl|loxAfr1|scaffold_7731 (2044-1443)
               

               
               21-684, gnl|mm7|chr6 (94182970-94183548)
               

               
               21-684, gnl|oryCun1|scaffold_198566 (129505-128925)
               

               
               21-684, gnl|panTro1|chrUn_random (22585028-22584411)
               

               
               21-684, gnl|rheMac2|chr2 (70608368-70607779)
               

               
               21-684, gnl|rn3|chr4 (128646571-128647146)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-684, gnl|bosTau2|chr22 (26811871-26811212)
               

               
               21-684, gnl|canFam2|chr20 (28528515-28527926)
               

               
               21-684, gnl|dasNov1|scaffold_286 (36667-36066)
               

               
               21-684, gnl|hg17|chr3 (65771957-65772580)
               

               
               21-684, gnl|Hg17|chr3 (65772641-65771959)
               

               
               21-684, gnl|loxAfr1|scaffold_7731 (2044-1443)
               

               
               21-684, gnl|mm7|chr6 (94182970-94183548)
               

               
               21-684, gnl|oryCun1|scaffold_198566 (129505-128925)
               

               
               21-684, gnl|panTro1|chrUn_random (22585028-22584411)
               

               
               21-684, gnl|rheMac2|chr2 (70608368-70607779)
               

               
               21-684, gnl|rn3|chr4 (128646571-128647146)

	21-139, - strand, RNAz p=0.714866
	278-510, + strand, RNAz p=0.861676
	287-399, - strand, RNAz p=0.568868
	477-585, - strand, RNAz p=0.961069

	21-684, gnl\|bosTau2\|chr22 (26811871-26811212)
	21-684, gnl\|canFam2\|chr20 (28528515-28527926)
	21-684, gnl\|dasNov1\|scaffold_286 (36667-36066)
	21-684, gnl\|hg17\|chr3 (65771957-65772580)
	21-684, gnl\|Hg17\|chr3 (65772641-65771959)
	21-684, gnl\|loxAfr1\|scaffold_7731 (2044-1443)
	21-684, gnl\|mm7\|chr6 (94182970-94183548)
	21-684, gnl\|oryCun1\|scaffold_198566 (129505-128925)
	21-684, gnl\|panTro1\|chrUn_random (22585028-22584411)
	21-684, gnl\|rheMac2\|chr2 (70608368-70607779)
	21-684, gnl\|rn3\|chr4 (128646571-128647146)