Non-Coding RNA Search

Ova1-OVRM10120H06

Sequence:


               
               TAGAGAGAGTGTGAAGGCAAATCTGTTTCTTCCTTCTGGAGGAAAATTCAGTTGTATTGG
CCCTTCCCAGGAGAACACAGTTGGGGAAGATGACATTTGCTCCAGCCATGGAGAATTATT
GTGGCAATGGTGATGTTTCTGTATTTTTGCTTTTAGGCAACTTGATAACTTAGAAGGTTT
TTGTTTGTTTGTTTTTAACCAGTTTTGCCCTTTTTTTTCCACTTGTAAGTGCAGTTTTGT
TATCCCGGGATTGCTAGTTTGGAATGTATGTCTTCTAAGCTAGTTAAACGCAACTAAGAG
CTCAGTGTGTTCAATGTTTGGAAAATAGTTGTAAGGAAAAAACGGAACCACATTTGGGGG
CCTCCTCATCTCTGAAACCCGCATAAAATGGTAACAGAATTCCTGAGCATGTTTAAAATC
CAATAGGTTTAAAGACCCTGACTTTGGCAAACTGAGTTTACTGCCTGGGTCCTAGTCTTT
ATACCTGTTTTAGTGCGCCACCTACTGGTTCTACTTAAGTCTGCTGTCAGGATTGTGTAG
CGATAGATTTTCCACAGCATTTGTAGTTTACTTAGCATTCTTTTAACATGATGATAATAG
CCGCAGAGCACTGAGTTGCCCATGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAGAGAGTGTGAAGGCAAATCTGTTTCTTCCTTCTGGAGGAAAATTCAGTTGTATTGG
CCCTTCCCAGGAGAACACAGTTGGGGAAGATGACATTTGCTCCAGCCATGGAGAATTATT
GTGGCAATGGTGATGTTTCTGTATTTTTGCTTTTAGGCAACTTGATAACTTAGAAGGTTT
TTGTTTGTTTGTTTTTAACCAGTTTTGCCCTTTTTTTTCCACTTGTAAGTGCAGTTTTGT
TATCCCGGGATTGCTAGTTTGGAATGTATGTCTTCTAAGCTAGTTAAACGCAACTAAGAG
CTCAGTGTGTTCAATGTTTGGAAAATAGTTGTAAGGAAAAAACGGAACCACATTTGGGGG
CCTCCTCATCTCTGAAACCCGCATAAAATGGTAACAGAATTCCTGAGCATGTTTAAAATC
CAATAGGTTTAAAGACCCTGACTTTGGCAAACTGAGTTTACTGCCTGGGTCCTAGTCTTT
ATACCTGTTTTAGTGCGCCACCTACTGGTTCTACTTAAGTCTGCTGTCAGGATTGTGTAG
CGATAGATTTTCCACAGCATTTGTAGTTTACTTAGCATTCTTTTAACATGATGATAATAG
CCGCAGAGCACTGAGTTGCCCATGCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               400-512, - strand, RNAz p=0.789728

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-512, - strand, RNAz p=0.789728

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               457-546, + strand, RNAmicro p=0.993676
               

               
               471-539, - strand, RNAmicro p=0.960014

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               457-546, + strand, RNAmicro p=0.993676
               

               
               471-539, - strand, RNAmicro p=0.960014

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-573, gnl|bosTau2|chr6 (30062008-30061473)
               

               
               6-573, gnl|Hg17|chr4 (38499378-38499973)
               

               
               6-573, gnl|Mm7|chr5 (64168034-64168544)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-573, gnl|bosTau2|chr6 (30062008-30061473)
               

               
               6-573, gnl|Hg17|chr4 (38499378-38499973)
               

               
               6-573, gnl|Mm7|chr5 (64168034-64168544)

	457-546, + strand, RNAmicro p=0.993676
	471-539, - strand, RNAmicro p=0.960014

	6-573, gnl\|bosTau2\|chr6 (30062008-30061473)
	6-573, gnl\|Hg17\|chr4 (38499378-38499973)
	6-573, gnl\|Mm7\|chr5 (64168034-64168544)