Non-Coding RNA Search

Ova1-OVRM10123F05

Sequence:


               
               AGGTGGCCCGCAGGCTGCAGCTGGAGCAGGAGATGGCCAAGGCCGGCCTCTGCGAGGCCG
AGCAGGAGCAGATGCGGAAGATCCTCTACCAGAAGGAGTCCAACTACAACCGGCTCAAGA
GGGCCAGGATGGACAAGTCCATGTTCGTGAAAATCAAGACGCTGGGCGTGGGCGCCTTCG
GGGAGGTGTGCCTGGCCTGCAAGGTGGACACGCACGCCCTGTACGCCATGAAGACCCTCA
GGAAGAAGGACGTGCTCAGCCGCAACCAGGTGGCCCACGTCAAGGCCGAGAGGGACATCC
TGGCGGAGGCGGACAACGAGTGGGTGGTGAAGCTCTACTACTCCTTCCAGGACAAGGACA
GCCTGTACTTCGTCATGGACTACATCCCGGGCGGGGACATGATGAGCCTGCTGATCCGCA
TGGAGGTCTTCCCGGAGCCCCTGGCCCGCTTCTACATCGCCGAGCTGACGCTGGCCATCG
AGAGTGTCCACAGGATGGGCTTCATCCACCGCGACATCAAGCCGGACAACATCCTGATCG
ACCTGGACGGGCACATCAAGCTGACCGACTTCGGCCTCTGCACGGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGGCCCGCAGGCTGCAGCTGGAGCAGGAGATGGCCAAGGCCGGCCTCTGCGAGGCCG
AGCAGGAGCAGATGCGGAAGATCCTCTACCAGAAGGAGTCCAACTACAACCGGCTCAAGA
GGGCCAGGATGGACAAGTCCATGTTCGTGAAAATCAAGACGCTGGGCGTGGGCGCCTTCG
GGGAGGTGTGCCTGGCCTGCAAGGTGGACACGCACGCCCTGTACGCCATGAAGACCCTCA
GGAAGAAGGACGTGCTCAGCCGCAACCAGGTGGCCCACGTCAAGGCCGAGAGGGACATCC
TGGCGGAGGCGGACAACGAGTGGGTGGTGAAGCTCTACTACTCCTTCCAGGACAAGGACA
GCCTGTACTTCGTCATGGACTACATCCCGGGCGGGGACATGATGAGCCTGCTGATCCGCA
TGGAGGTCTTCCCGGAGCCCCTGGCCCGCTTCTACATCGCCGAGCTGACGCTGGCCATCG
AGAGTGTCCACAGGATGGGCTTCATCCACCGCGACATCAAGCCGGACAACATCCTGATCG
ACCTGGACGGGCACATCAAGCTGACCGACTTCGGCCTCTGCACGGGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55627546|ref|XP_518796.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627546|ref|XP_518796.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-158, - strand, RNAz p=0.65277
               

               
               239-358, + strand, RNAz p=0.584392

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-158, - strand, RNAz p=0.65277
               

               
               239-358, + strand, RNAz p=0.584392

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               40-586, gnl|bosTau2|chr12 (19708729-19709275)
               

               
               40-586, gnl|canFam2|chr25 (20146075-20145475)
               

               
               40-586, gnl|danRer3|chr9 (14728751-14728157)
               

               
               40-586, gnl|dasNov1|scaffold_39963 (6116-6720)
               

               
               40-586, gnl|echTel1|scaffold_273846 (10436-11040)
               

               
               40-586, gnl|fr1|chrUn (78363730-78363016)
               

               
               40-586, gnl|galGal2|chr1 (170654388-170653785)
               

               
               40-586, gnl|hg17|chr13 (20455361-20455966)
               

               
               40-586, gnl|Hg17|chr13 (20455947-20455401)
               

               
               40-586, gnl|loxAfr1|scaffold_17597 (21402-20801)
               

               
               40-586, gnl|mm7|chr14 (52564835-52565435)
               

               
               40-586, gnl|Mm7|chr14 (52565421-52564875)
               

               
               40-586, gnl|monDom2|scaffold_15 (28796872-28797477)
               

               
               40-586, gnl|oryCun1|scaffold_91461 (3823-4424)
               

               
               40-586, gnl|panTro1|chr14 (19626736-19627340)
               

               
               40-586, gnl|rheMac2|chr4 (113609293-113608699)
               

               
               40-586, gnl|rn3|chr15 (36743199-36743799)
               

               
               40-586, gnl|tetNig1|chr2 (17650761-17650089)
               

               
               40-586, gnl|xenTro1|scaffold_952 (207078-206489)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-586, gnl|bosTau2|chr12 (19708729-19709275)
               

               
               40-586, gnl|canFam2|chr25 (20146075-20145475)
               

               
               40-586, gnl|danRer3|chr9 (14728751-14728157)
               

               
               40-586, gnl|dasNov1|scaffold_39963 (6116-6720)
               

               
               40-586, gnl|echTel1|scaffold_273846 (10436-11040)
               

               
               40-586, gnl|fr1|chrUn (78363730-78363016)
               

               
               40-586, gnl|galGal2|chr1 (170654388-170653785)
               

               
               40-586, gnl|hg17|chr13 (20455361-20455966)
               

               
               40-586, gnl|Hg17|chr13 (20455947-20455401)
               

               
               40-586, gnl|loxAfr1|scaffold_17597 (21402-20801)
               

               
               40-586, gnl|mm7|chr14 (52564835-52565435)
               

               
               40-586, gnl|Mm7|chr14 (52565421-52564875)
               

               
               40-586, gnl|monDom2|scaffold_15 (28796872-28797477)
               

               
               40-586, gnl|oryCun1|scaffold_91461 (3823-4424)
               

               
               40-586, gnl|panTro1|chr14 (19626736-19627340)
               

               
               40-586, gnl|rheMac2|chr4 (113609293-113608699)
               

               
               40-586, gnl|rn3|chr15 (36743199-36743799)
               

               
               40-586, gnl|tetNig1|chr2 (17650761-17650089)
               

               
               40-586, gnl|xenTro1|scaffold_952 (207078-206489)

	40-158, - strand, RNAz p=0.65277
	239-358, + strand, RNAz p=0.584392

	40-586, gnl\|bosTau2\|chr12 (19708729-19709275)
	40-586, gnl\|canFam2\|chr25 (20146075-20145475)
	40-586, gnl\|danRer3\|chr9 (14728751-14728157)
	40-586, gnl\|dasNov1\|scaffold_39963 (6116-6720)
	40-586, gnl\|echTel1\|scaffold_273846 (10436-11040)
	40-586, gnl\|fr1\|chrUn (78363730-78363016)
	40-586, gnl\|galGal2\|chr1 (170654388-170653785)
	40-586, gnl\|hg17\|chr13 (20455361-20455966)
	40-586, gnl\|Hg17\|chr13 (20455947-20455401)
	40-586, gnl\|loxAfr1\|scaffold_17597 (21402-20801)
	40-586, gnl\|mm7\|chr14 (52564835-52565435)
	40-586, gnl\|Mm7\|chr14 (52565421-52564875)
	40-586, gnl\|monDom2\|scaffold_15 (28796872-28797477)
	40-586, gnl\|oryCun1\|scaffold_91461 (3823-4424)
	40-586, gnl\|panTro1\|chr14 (19626736-19627340)
	40-586, gnl\|rheMac2\|chr4 (113609293-113608699)
	40-586, gnl\|rn3\|chr15 (36743199-36743799)
	40-586, gnl\|tetNig1\|chr2 (17650761-17650089)
	40-586, gnl\|xenTro1\|scaffold_952 (207078-206489)