Non-Coding RNA Search

Ova1-OVRM10130E03

Sequence:


               
               ATGATCCATTCCCAACTGACCAGCATTGAGGAACAGTGCACATTCCCATCCTAAAAAAAA
AAAAAAAAAAATGCCTTCCCCTGTAGCTATGCAAGATGTCAGGCAGAGGCAAGATTACCG
CTCCCCTTCCTAAATGTCTCCTATAGACTCACCCAAACTGGAGGCAGGACGGGGTGAAGA
GGAGGCAAGAAAGAGCCCTAGAGGGTGCAGAGTGGCCACTCTCCTCTCTCTGGACAGAGT
AGGTAGCTCGGAGCTCCCAGCAAGCCCCCAGCAGCACAGACCTCAGAGCAGCTCATCTCT
GAATACCGGTAGCCTCTGCTGTCAGATTTCACTTTGATCCCTGAAAATTACAAGAACCTC
AGCTCTTCAGAAGAGAGGCAGCTGCCGAGCCAGTGTGATTGCAGGATTTCTCCCCCAAAG
CCCGGGGCCAGGCATCTAACCTTGCCTGCATCCTGCATGAGTAACCACCTTCCCGCCTCA
CCCGGGAGGTCACTGCCTAGTGGACAGATAGCAGCTGGGCTGAGCTGCCCCCTGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGATCCATTCCCAACTGACCAGCATTGAGGAACAGTGCACATTCCCATCCTAAAAAAAA
AAAAAAAAAAATGCCTTCCCCTGTAGCTATGCAAGATGTCAGGCAGAGGCAAGATTACCG
CTCCCCTTCCTAAATGTCTCCTATAGACTCACCCAAACTGGAGGCAGGACGGGGTGAAGA
GGAGGCAAGAAAGAGCCCTAGAGGGTGCAGAGTGGCCACTCTCCTCTCTCTGGACAGAGT
AGGTAGCTCGGAGCTCCCAGCAAGCCCCCAGCAGCACAGACCTCAGAGCAGCTCATCTCT
GAATACCGGTAGCCTCTGCTGTCAGATTTCACTTTGATCCCTGAAAATTACAAGAACCTC
AGCTCTTCAGAAGAGAGGCAGCTGCCGAGCCAGTGTGATTGCAGGATTTCTCCCCCAAAG
CCCGGGGCCAGGCATCTAACCTTGCCTGCATCCTGCATGAGTAACCACCTTCCCGCCTCA
CCCGGGAGGTCACTGCCTAGTGGACAGATAGCAGCTGGGCTGAGCTGCCCCCTGAGCC

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               68-267, - strand, RNAz p=0.980305
               

               
               117-234, - strand, RNAz p=0.891605
               

               
               358-516, - strand, RNAz p=0.90698
               

               
               394-494, + strand, RNAz p=0.637241

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               68-267, - strand, RNAz p=0.980305
               

               
               117-234, - strand, RNAz p=0.891605
               

               
               358-516, - strand, RNAz p=0.90698
               

               
               394-494, + strand, RNAz p=0.637241

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               2-531, gnl|bosTau2|chr10 (50949114-50949626)
               

               
               2-531, gnl|canFam2|chr8 (49001296-49001924)
               

               
               2-531, gnl|echTel1|scaffold_161787 (9279-9929)
               

               
               2-531, gnl|hg17|chr14 (72095131-72095791)
               

               
               2-531, gnl|Hg17|chr14 (72095441-72095977)
               

               
               2-531, gnl|loxAfr1|scaffold_16407 (16673-17323)
               

               
               2-531, gnl|mm7|chr12 (81148186-81148823)
               

               
               2-531, gnl|Mm7|chr12 (81148495-81149028)
               

               
               2-531, gnl|monDom2|scaffold_8 (62895606-62894965)
               

               
               2-531, gnl|oryCun1|scaffold_203790 (52260-52913)
               

               
               2-531, gnl|panTro1|chr15 (71869716-71870376)
               

               
               2-531, gnl|rheMac2|chr7 (135650083-135650744)
               

               
               2-531, gnl|rn3|chr6 (106986942-106987557)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-531, gnl|bosTau2|chr10 (50949114-50949626)
               

               
               2-531, gnl|canFam2|chr8 (49001296-49001924)
               

               
               2-531, gnl|echTel1|scaffold_161787 (9279-9929)
               

               
               2-531, gnl|hg17|chr14 (72095131-72095791)
               

               
               2-531, gnl|Hg17|chr14 (72095441-72095977)
               

               
               2-531, gnl|loxAfr1|scaffold_16407 (16673-17323)
               

               
               2-531, gnl|mm7|chr12 (81148186-81148823)
               

               
               2-531, gnl|Mm7|chr12 (81148495-81149028)
               

               
               2-531, gnl|monDom2|scaffold_8 (62895606-62894965)
               

               
               2-531, gnl|oryCun1|scaffold_203790 (52260-52913)
               

               
               2-531, gnl|panTro1|chr15 (71869716-71870376)
               

               
               2-531, gnl|rheMac2|chr7 (135650083-135650744)
               

               
               2-531, gnl|rn3|chr6 (106986942-106987557)

	68-267, - strand, RNAz p=0.980305
	117-234, - strand, RNAz p=0.891605
	358-516, - strand, RNAz p=0.90698
	394-494, + strand, RNAz p=0.637241

	2-531, gnl\|bosTau2\|chr10 (50949114-50949626)
	2-531, gnl\|canFam2\|chr8 (49001296-49001924)
	2-531, gnl\|echTel1\|scaffold_161787 (9279-9929)
	2-531, gnl\|hg17\|chr14 (72095131-72095791)
	2-531, gnl\|Hg17\|chr14 (72095441-72095977)
	2-531, gnl\|loxAfr1\|scaffold_16407 (16673-17323)
	2-531, gnl\|mm7\|chr12 (81148186-81148823)
	2-531, gnl\|Mm7\|chr12 (81148495-81149028)
	2-531, gnl\|monDom2\|scaffold_8 (62895606-62894965)
	2-531, gnl\|oryCun1\|scaffold_203790 (52260-52913)
	2-531, gnl\|panTro1\|chr15 (71869716-71870376)
	2-531, gnl\|rheMac2\|chr7 (135650083-135650744)
	2-531, gnl\|rn3\|chr6 (106986942-106987557)