Ova1-OVRM10132H08
|
CTTGGGCTTTCTTTGACAGGGGATTCTTGTAAATTGATGCTTTCTACAAGTGAGTATAGT
CAGTCCCCAAAGATAGAGAGTTCTCACAGGATTGATGAGGATGGAGAAAACACACAGATT
GAAGATACTGAGCCCATGTCTCCAGTTCTCAATTCTAAACTTGTTCCTGCTGAAAATGAT
AGTGTTCTGATTAATCCAGCACAAGATGGCCAAGTAGAACTGAATCAGAATGATGATAAA
ACAAAGGAGGATAACACAGAAACCAGAGAGGACATAAGTATTTTAGCTGCTGGTTGCAAA
GGCAGAGAAGAAACTGTAGCAGAAGACGTTTGTATCGATCTCACTTGTGATTCAGGTAGT
CAGGCAGTTCCCTCTCCAGCTACTCGATCTGAGGCACTCTCTAGTGTGTTAGATCAGGAG
GAAGCAATAGAAATTAAAGAACATCATCCAGAAGAGGGGTCTTCAGGGTCTGAAGTGGAA
GAAGTCCCTGAGACTCCTTGTGAAAGTCAAGGAGAGGAGCCCAAAGAAGAAAATATGGAG
ACTGTCCCGTTGCACCTTTCTCTGACTGAAACTCAGTCCCAAGGGTTGTGTCTTCCAAAG
GAAGCCCCCAAACAAGAATCCCAGGAAGCTATGGAAGTTGAAACCAGTGTGATTAGTATT
GAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTGGGCTTTCTTTGACAGGGGATTCTTGTAAATTGATGCTTTCTACAAGTGAGTATAGT
CAGTCCCCAAAGATAGAGAGTTCTCACAGGATTGATGAGGATGGAGAAAACACACAGATT
GAAGATACTGAGCCCATGTCTCCAGTTCTCAATTCTAAACTTGTTCCTGCTGAAAATGAT
AGTGTTCTGATTAATCCAGCACAAGATGGCCAAGTAGAACTGAATCAGAATGATGATAAA
ACAAAGGAGGATAACACAGAAACCAGAGAGGACATAAGTATTTTAGCTGCTGGTTGCAAA
GGCAGAGAAGAAACTGTAGCAGAAGACGTTTGTATCGATCTCACTTGTGATTCAGGTAGT
CAGGCAGTTCCCTCTCCAGCTACTCGATCTGAGGCACTCTCTAGTGTGTTAGATCAGGAG
GAAGCAATAGAAATTAAAGAACATCATCCAGAAGAGGGGTCTTCAGGGTCTGAAGTGGAA
GAAGTCCCTGAGACTCCTTGTGAAAGTCAAGGAGAGGAGCCCAAAGAAGAAAATATGGAG
ACTGTCCCGTTGCACCTTTCTCTGACTGAAACTCAGTCCCAAGGGTTGTGTCTTCCAAAG
GAAGCCCCCAAACAAGAATCCCAGGAAGCTATGGAAGTTGAAACCAGTGTGATTAGTATT
GAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
236-352, BP154550 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP154550.1|), blast E-value=0, identity=100% |
|
238-352, DA445719 CTONG2 Homo sapiens cDNA clone CTONG2016396 5', mRNA
(dbj|DA445719.1|), blast E-value=9e-24, identity=87.83% |
|
271-352, DA459379 CTONG3 Homo sapiens cDNA clone CTONG3005794 5', mRNA
(dbj|DA459379.1|), blast E-value=8e-21, identity=91.46% |
|
238-352, DB284471 UTERU3 Homo sapiens cDNA clone UTERU3012393 5', mRNA
(dbj|DB284471.1|), blast E-value=9e-24, identity=87.83% |
|
238-352, AGENCOURT_7750937 NIH_MGC_72 Homo sapiens cDNA clone IMAGE
(gb|BQ433892.1|), blast E-value=9e-24, identity=87.83% |
|
238-352, 17000532821180 GRN_ES Homo sapiens cDNA 5', mRNA sequence
(gb|CN293799.1|), blast E-value=9e-24, identity=87.83% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
236-352, BP154550 full-length enriched swine cDNA library, adult ovary Sus
(dbj|BP154550.1|), blast E-value=0, identity=100% |
|
238-352, DA445719 CTONG2 Homo sapiens cDNA clone CTONG2016396 5', mRNA
(dbj|DA445719.1|), blast E-value=9e-24, identity=87.83% |
|
271-352, DA459379 CTONG3 Homo sapiens cDNA clone CTONG3005794 5', mRNA
(dbj|DA459379.1|), blast E-value=8e-21, identity=91.46% |
|
238-352, DB284471 UTERU3 Homo sapiens cDNA clone UTERU3012393 5', mRNA
(dbj|DB284471.1|), blast E-value=9e-24, identity=87.83% |
|
238-352, AGENCOURT_7750937 NIH_MGC_72 Homo sapiens cDNA clone IMAGE
(gb|BQ433892.1|), blast E-value=9e-24, identity=87.83% |
|
238-352, 17000532821180 GRN_ES Homo sapiens cDNA 5', mRNA sequence
(gb|CN293799.1|), blast E-value=9e-24, identity=87.83% |
|
78-663, gnl|bosTau2|chr21 (34316655-34316069) |
|
78-663, gnl|canFam2|chr30 (13297774-13298349) |
|
78-663, gnl|dasNov1|scaffold_39870 (1097-519) |
|
78-663, gnl|echTel1|scaffold_322287 (169707-170279) |
|
78-663, gnl|galGal2|chr10 (20809245-20808711) |
|
78-663, gnl|hg17|chr15 (41535887-41536465) |
|
78-663, gnl|Hg17|chr15 (41536490-41535905) |
|
78-663, gnl|loxAfr1|scaffold_6902 (118954-118376) |
|
78-663, gnl|mm7|chr2 (120976921-120977475) |
|
78-663, gnl|Mm7|chr2 (120977500-120976939) |
|
78-663, gnl|monDom2|scaffold_53 (10576841-10576224) |
|
78-663, gnl|oryCun1|scaffold_882 (582-4) |
|
78-663, gnl|panTro1|chr16 (41528197-41528775) |
|
78-663, gnl|rheMac2|chr7 (21891075-21891653) |
|
78-663, gnl|rn3|chr3 (107934176-107934751) |
|
78-663, gnl|xenTro1|scaffold_358 (1083997-1083460) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
78-663, gnl|bosTau2|chr21 (34316655-34316069) |
|
78-663, gnl|canFam2|chr30 (13297774-13298349) |
|
78-663, gnl|dasNov1|scaffold_39870 (1097-519) |
|
78-663, gnl|echTel1|scaffold_322287 (169707-170279) |
|
78-663, gnl|galGal2|chr10 (20809245-20808711) |
|
78-663, gnl|hg17|chr15 (41535887-41536465) |
|
78-663, gnl|Hg17|chr15 (41536490-41535905) |
|
78-663, gnl|loxAfr1|scaffold_6902 (118954-118376) |
|
78-663, gnl|mm7|chr2 (120976921-120977475) |
|
78-663, gnl|Mm7|chr2 (120977500-120976939) |
|
78-663, gnl|monDom2|scaffold_53 (10576841-10576224) |
|
78-663, gnl|oryCun1|scaffold_882 (582-4) |
|
78-663, gnl|panTro1|chr16 (41528197-41528775) |
|
78-663, gnl|rheMac2|chr7 (21891075-21891653) |
|
78-663, gnl|rn3|chr3 (107934176-107934751) |
|
78-663, gnl|xenTro1|scaffold_358 (1083997-1083460) |
