Non-Coding RNA Search

Ova1-OVRM10136B03

Sequence:


               
               CTGGTTCCGCTGACACCCCCCCCCACCCTTTCTCCTCCTACACCACGTCCCGAACCTGAC
AGTAATCACTAAGTCCTAACACTTTGCAATTTAGCCATAAAAACTGTCAGCACACCCACG
TACATATGTGAGTGTTTTCTATATAAAACTGCAAAACCCGCTTCCAGTGGACTCTGTGGC
ATCTCGCTCTTTACTGTTTGCAAAAGCTGCTAGGGCTTCGTGAATGTGCTTGGGAACTTT
GATGGTGATTCCCGCCGCCCTCTGTACCCTCGTGGCGCATGGCTGCTTTTTTTTTTTTTT
TT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTTCCGCTGACACCCCCCCCCACCCTTTCTCCTCCTACACCACGTCCCGAACCTGAC
AGTAATCACTAAGTCCTAACACTTTGCAATTTAGCCATAAAAACTGTCAGCACACCCACG
TACATATGTGAGTGTTTTCTATATAAAACTGCAAAACCCGCTTCCAGTGGACTCTGTGGC
ATCTCGCTCTTTACTGTTTGCAAAAGCTGCTAGGGCTTCGTGAATGTGCTTGGGAACTTT
GATGGTGATTCCCGCCGCCCTCTGTACCCTCGTGGCGCATGGCTGCTTTTTTTTTTTTTT
TT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               45-296, - strand, RNAz p=0.94505

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-296, - strand, RNAz p=0.94505

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               5-296, gnl|bosTau2|chr10 (60394063-60393772)
               

               
               5-296, gnl|canFam2|chr8 (50082100-50082719)
               

               
               5-296, gnl|dasNov1|scaffold_1591 (119185-119748)
               

               
               5-296, gnl|echTel1|scaffold_165832 (3421-2814)
               

               
               5-296, gnl|galGal2|chr5 (23352729-23352152)
               

               
               5-296, gnl|hg17|chr14 (73322380-73322970)
               

               
               5-296, gnl|Hg17|chr14 (73322990-73322713)
               

               
               5-296, gnl|loxAfr1|scaffold_1035 (16742-17354)
               

               
               5-296, gnl|mm7|chr12 (82214099-82214711)
               

               
               5-296, gnl|Mm7|chr12 (82214734-82214449)
               

               
               5-296, gnl|monDom2|scaffold_8 (61256094-61255535)
               

               
               5-296, gnl|oryCun1|scaffold_185504 (7-592)
               

               
               5-296, gnl|panTro1|chr15 (73103674-73104264)
               

               
               5-296, gnl|rheMac2|chr7 (136876754-136877345)
               

               
               5-296, gnl|rn3|chr6 (108272819-108273417)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-296, gnl|bosTau2|chr10 (60394063-60393772)
               

               
               5-296, gnl|canFam2|chr8 (50082100-50082719)
               

               
               5-296, gnl|dasNov1|scaffold_1591 (119185-119748)
               

               
               5-296, gnl|echTel1|scaffold_165832 (3421-2814)
               

               
               5-296, gnl|galGal2|chr5 (23352729-23352152)
               

               
               5-296, gnl|hg17|chr14 (73322380-73322970)
               

               
               5-296, gnl|Hg17|chr14 (73322990-73322713)
               

               
               5-296, gnl|loxAfr1|scaffold_1035 (16742-17354)
               

               
               5-296, gnl|mm7|chr12 (82214099-82214711)
               

               
               5-296, gnl|Mm7|chr12 (82214734-82214449)
               

               
               5-296, gnl|monDom2|scaffold_8 (61256094-61255535)
               

               
               5-296, gnl|oryCun1|scaffold_185504 (7-592)
               

               
               5-296, gnl|panTro1|chr15 (73103674-73104264)
               

               
               5-296, gnl|rheMac2|chr7 (136876754-136877345)
               

               
               5-296, gnl|rn3|chr6 (108272819-108273417)

	5-296, gnl\|bosTau2\|chr10 (60394063-60393772)
	5-296, gnl\|canFam2\|chr8 (50082100-50082719)
	5-296, gnl\|dasNov1\|scaffold_1591 (119185-119748)
	5-296, gnl\|echTel1\|scaffold_165832 (3421-2814)
	5-296, gnl\|galGal2\|chr5 (23352729-23352152)
	5-296, gnl\|hg17\|chr14 (73322380-73322970)
	5-296, gnl\|Hg17\|chr14 (73322990-73322713)
	5-296, gnl\|loxAfr1\|scaffold_1035 (16742-17354)
	5-296, gnl\|mm7\|chr12 (82214099-82214711)
	5-296, gnl\|Mm7\|chr12 (82214734-82214449)
	5-296, gnl\|monDom2\|scaffold_8 (61256094-61255535)
	5-296, gnl\|oryCun1\|scaffold_185504 (7-592)
	5-296, gnl\|panTro1\|chr15 (73103674-73104264)
	5-296, gnl\|rheMac2\|chr7 (136876754-136877345)
	5-296, gnl\|rn3\|chr6 (108272819-108273417)