Non-Coding RNA Search

Ova1-OVRM10136C06

Sequence:


               
               TCACTCCCCCACCCCCGGCCACCACCAACAGCACAAACCCCAGCCCTCAAGGCAGCCACT
CGGCTATCGGCTTGTCGGGCCTGAACCCCAGCACGGGAAGCACAATGGTGGGGTTGAGCT
CCGGGCTGAGTCCAGCCCTCATGAGCAACAACCCTTTGGCCACTATCCAAGCCCTGGCCT
CTGGTGTCACCCTGCCCCTTACCAGCCTTGACAGCAGCGGGAACCTGGTGCTGGGGGCGG
CTGGCGCGGCCCCAGGGAGCCCGGGCCTGGTGACGTCACCACTCTTCTTGAACCACGCCG
GGCTGCCCCTGCTCAGCGCCACGCCTGGCGTGGGCCTGGTCTCGGCAGCCGCTGCAGCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACTCCCCCACCCCCGGCCACCACCAACAGCACAAACCCCAGCCCTCAAGGCAGCCACT
CGGCTATCGGCTTGTCGGGCCTGAACCCCAGCACGGGAAGCACAATGGTGGGGTTGAGCT
CCGGGCTGAGTCCAGCCCTCATGAGCAACAACCCTTTGGCCACTATCCAAGCCCTGGCCT
CTGGTGTCACCCTGCCCCTTACCAGCCTTGACAGCAGCGGGAACCTGGTGCTGGGGGCGG
CTGGCGCGGCCCCAGGGAGCCCGGGCCTGGTGACGTCACCACTCTTCTTGAACCACGCCG
GGCTGCCCCTGCTCAGCGCCACGCCTGGCGTGGGCCTGGTCTCGGCAGCCGCTGCAGCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UMI6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UMI6_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               166-282, - strand, RNAz p=0.98536

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               166-282, - strand, RNAz p=0.98536

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               166-360, gnl|bosTau2|chr18 (44828740-44828546)
               

               
               166-360, gnl|canFam2|chr1 (115149665-115149525)
               

               
               166-360, gnl|danRer3|chr19 (1577230-1577395)
               

               
               166-360, gnl|fr1|chrUn (100212081-100211961)
               

               
               166-360, gnl|galGal2|chr1 (85570883-85571006)
               

               
               166-360, gnl|hg17|chr19 (47287379-47287519)
               

               
               166-360, gnl|Hg17|chr19 (47287589-47287395)
               

               
               166-360, gnl|mm7|chr7 (21882285-21882425)
               

               
               166-360, gnl|Mm7|chr7 (21882495-21882301)
               

               
               166-360, gnl|monDom2|scaffold_317 (128010-128150)
               

               
               166-360, gnl|oryCun1|scaffold_212811 (40735-40595)
               

               
               166-360, gnl|panTro1|chr20 (44178483-44178623)
               

               
               166-360, gnl|rheMac2|chr19 (48404937-48405077)
               

               
               166-360, gnl|rn3|chr1 (80483490-80483630)
               

               
               166-360, gnl|tetNig1|chr8 (9456588-9456469)
               

               
               166-360, gnl|xenTro1|scaffold_1196 (93559-93451)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-360, gnl|bosTau2|chr18 (44828740-44828546)
               

               
               166-360, gnl|canFam2|chr1 (115149665-115149525)
               

               
               166-360, gnl|danRer3|chr19 (1577230-1577395)
               

               
               166-360, gnl|fr1|chrUn (100212081-100211961)
               

               
               166-360, gnl|galGal2|chr1 (85570883-85571006)
               

               
               166-360, gnl|hg17|chr19 (47287379-47287519)
               

               
               166-360, gnl|Hg17|chr19 (47287589-47287395)
               

               
               166-360, gnl|mm7|chr7 (21882285-21882425)
               

               
               166-360, gnl|Mm7|chr7 (21882495-21882301)
               

               
               166-360, gnl|monDom2|scaffold_317 (128010-128150)
               

               
               166-360, gnl|oryCun1|scaffold_212811 (40735-40595)
               

               
               166-360, gnl|panTro1|chr20 (44178483-44178623)
               

               
               166-360, gnl|rheMac2|chr19 (48404937-48405077)
               

               
               166-360, gnl|rn3|chr1 (80483490-80483630)
               

               
               166-360, gnl|tetNig1|chr8 (9456588-9456469)
               

               
               166-360, gnl|xenTro1|scaffold_1196 (93559-93451)

	166-360, gnl\|bosTau2\|chr18 (44828740-44828546)
	166-360, gnl\|canFam2\|chr1 (115149665-115149525)
	166-360, gnl\|danRer3\|chr19 (1577230-1577395)
	166-360, gnl\|fr1\|chrUn (100212081-100211961)
	166-360, gnl\|galGal2\|chr1 (85570883-85571006)
	166-360, gnl\|hg17\|chr19 (47287379-47287519)
	166-360, gnl\|Hg17\|chr19 (47287589-47287395)
	166-360, gnl\|mm7\|chr7 (21882285-21882425)
	166-360, gnl\|Mm7\|chr7 (21882495-21882301)
	166-360, gnl\|monDom2\|scaffold_317 (128010-128150)
	166-360, gnl\|oryCun1\|scaffold_212811 (40735-40595)
	166-360, gnl\|panTro1\|chr20 (44178483-44178623)
	166-360, gnl\|rheMac2\|chr19 (48404937-48405077)
	166-360, gnl\|rn3\|chr1 (80483490-80483630)
	166-360, gnl\|tetNig1\|chr8 (9456588-9456469)
	166-360, gnl\|xenTro1\|scaffold_1196 (93559-93451)