Non-Coding RNA Search

Ova1-OVRM10140H01

Sequence:


               
               ATTGTAGCGGGACTTAGTGATAAAAGAGAACTTTGTAGCTTGGTTCATAAAAGAAAATTC
GCAGTTTGGTAGAGTTGGGACCACACCTTCAGACACAGACACTGCATTCAGACTTGCCGC
CCCCCACCCTGCTCAGCCTCTGGGCTGCAGCCCAGACTGAGGTTGGGCAGCGGGAAGGAG
GAAGCCCTGTGGTTAAACCACTTGGGATAATCGAAAGTCGACCATACTTATTTTCAATTT
GGCAGCTGCATTAGCTTTCTCCTCAAGTGCGCAGTTTTCCCTGGCCTTCTTCACTCTGCG
GCCTGTTCACCATTGGTGACCTGGCAGAGGCAGCTGAGCCAGGCTCACCATGGCTCCCTT
TGCTTGTTCCAGTGCTTTCCCTGACTTGGCCACGCTCTCTGGTCTCAGGAAATTGGATCA
ATGGCAATGAGTGCAAAAGAAGAAAAGGAAAGATGAAAATCAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGTAGCGGGACTTAGTGATAAAAGAGAACTTTGTAGCTTGGTTCATAAAAGAAAATTC
GCAGTTTGGTAGAGTTGGGACCACACCTTCAGACACAGACACTGCATTCAGACTTGCCGC
CCCCCACCCTGCTCAGCCTCTGGGCTGCAGCCCAGACTGAGGTTGGGCAGCGGGAAGGAG
GAAGCCCTGTGGTTAAACCACTTGGGATAATCGAAAGTCGACCATACTTATTTTCAATTT
GGCAGCTGCATTAGCTTTCTCCTCAAGTGCGCAGTTTTCCCTGGCCTTCTTCACTCTGCG
GCCTGTTCACCATTGGTGACCTGGCAGAGGCAGCTGAGCCAGGCTCACCATGGCTCCCTT
TGCTTGTTCCAGTGCTTTCCCTGACTTGGCCACGCTCTCTGGTCTCAGGAAATTGGATCA
ATGGCAATGAGTGCAAAAGAAGAAAAGGAAAGATGAAAATCAAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-247, - strand, RNAz p=0.978055

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-247, - strand, RNAz p=0.978055

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               90-207, - strand, RNAmicro p=0.988558

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               90-207, - strand, RNAmicro p=0.988558

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-453, gnl|bosTau2|chr3 (57254146-57253692)
               

               
               10-453, gnl|Hg17|chr1 (61390332-61390800)
               

               
               10-453, gnl|Mm7|chr4 (97288539-97288978)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-453, gnl|bosTau2|chr3 (57254146-57253692)
               

               
               10-453, gnl|Hg17|chr1 (61390332-61390800)
               

               
               10-453, gnl|Mm7|chr4 (97288539-97288978)

	10-453, gnl\|bosTau2\|chr3 (57254146-57253692)
	10-453, gnl\|Hg17\|chr1 (61390332-61390800)
	10-453, gnl\|Mm7\|chr4 (97288539-97288978)