Non-Coding RNA Search

Ova1-OVRM10148G06

Sequence:


               
               TGATTTCTATCGAGTAGTTTCTACCTTTGGTGTGGAGTATGACCCTGACACGATGCAGTT
CCATTGGGATCGCTTCCGCACTTTTGCCCGACTGGACAAAAAAACAGATGAAAGCCTTAC
CAAGTATTTTCATGGCTTTGTGGCCATGTGCCGCCAAGTGTGCCGCCTTCCCCCAGCAGC
TGGAGACGAACCTCCAGACCCTAATCTGTTCATTGAGCCCATCACTGAGGAAAGGGCCTC
AAGGACACTCTACCGTATTGAATTGCTTCGGCGCTTACGGGAACAAGTTTTGTGCCACCC
TCTTTTGGAAGATCGGCTGGCATTATGTCAGCCTCCAGGTCCTGAATTGCCCAAATGGTG
GGAGCCTGTTCGGCATGATGGGGAGCTTCTACGAGGGGCAGCCCGCCACGGGGTGAGCCA
AACAGACTGCAACATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAATTA
TATGCAGAACCATCAGGCAGGAGCACCAGCTCCATCCCTGTCACGCTGCTCTACTCCACT
GCTACACCAGCAGTATACCTCACGCACTGCCTCACCACTGCCCCTGCGCCCAGATGCTCC
TGTTGAAAAGCCACCTGAGGAGACAGCTGCCCAGGTGCCCAGTCTGGAGAGTCTGACTTT
AAAGCTAGAGCATGAGGTGGTGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATTTCTATCGAGTAGTTTCTACCTTTGGTGTGGAGTATGACCCTGACACGATGCAGTT
CCATTGGGATCGCTTCCGCACTTTTGCCCGACTGGACAAAAAAACAGATGAAAGCCTTAC
CAAGTATTTTCATGGCTTTGTGGCCATGTGCCGCCAAGTGTGCCGCCTTCCCCCAGCAGC
TGGAGACGAACCTCCAGACCCTAATCTGTTCATTGAGCCCATCACTGAGGAAAGGGCCTC
AAGGACACTCTACCGTATTGAATTGCTTCGGCGCTTACGGGAACAAGTTTTGTGCCACCC
TCTTTTGGAAGATCGGCTGGCATTATGTCAGCCTCCAGGTCCTGAATTGCCCAAATGGTG
GGAGCCTGTTCGGCATGATGGGGAGCTTCTACGAGGGGCAGCCCGCCACGGGGTGAGCCA
AACAGACTGCAACATCATGCAGGACCCAGACTTCTCTTTTCTGGCTGCCCGTATGAATTA
TATGCAGAACCATCAGGCAGGAGCACCAGCTCCATCCCTGTCACGCTGCTCTACTCCACT
GCTACACCAGCAGTATACCTCACGCACTGCCTCACCACTGCCCCTGCGCCCAGATGCTCC
TGTTGAAAAGCCACCTGAGGAGACAGCTGCCCAGGTGCCCAGTCTGGAGAGTCTGACTTT
AAAGCTAGAGCATGAGGTGGTGGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               308-587, - strand, RNAz p=0.985997

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               308-587, - strand, RNAz p=0.985997

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               308-587, AU118560 HEMBA1 Homo sapiens cDNA clone HEMBA1003873 5', mRNA 
(dbj|AU118560.1|), blast E-value=0, identity=97.5% 
               

               
               308-587, BP460825 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP460825.1|), blast E-value=0, identity=100% 
               

               
               308-587, DA497980 FCBBF3 Homo sapiens cDNA clone FCBBF3011192 5', mRNA 
(dbj|DA497980.1|), blast E-value=0, identity=97.5% 
               

               
               308-587, AGENCOURT_8485020 NIH_MGC_113 Homo sapiens cDNA clone IMAGE 
(gb|BQ710833.1|), blast E-value=0, identity=97.5% 
               

               
               308-587, 17000424955892 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN405795.1|), blast E-value=0, identity=97.5% 
               

               
               308-587, nbd06a12.y1 Rabbit lens. Unnormalized (nbd) Oryctolagus cuniculus 
(gb|EB381124.1|), blast E-value=0, identity=97.5%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               308-587, AU118560 HEMBA1 Homo sapiens cDNA clone HEMBA1003873 5', mRNA 
(dbj|AU118560.1|), blast E-value=0, identity=97.5% 
               

               
               308-587, BP460825 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP460825.1|), blast E-value=0, identity=100% 
               

               
               308-587, DA497980 FCBBF3 Homo sapiens cDNA clone FCBBF3011192 5', mRNA 
(dbj|DA497980.1|), blast E-value=0, identity=97.5% 
               

               
               308-587, AGENCOURT_8485020 NIH_MGC_113 Homo sapiens cDNA clone IMAGE 
(gb|BQ710833.1|), blast E-value=0, identity=97.5% 
               

               
               308-587, 17000424955892 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN405795.1|), blast E-value=0, identity=97.5% 
               

               
               308-587, nbd06a12.y1 Rabbit lens. Unnormalized (nbd) Oryctolagus cuniculus 
(gb|EB381124.1|), blast E-value=0, identity=97.5%

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-186, gnl|bosTau2|chr10 (15928534-15928349)
               

               
               1-186, gnl|Hg17|chr14 (20932463-20932278)
               

               
               1-186, gnl|Mm7|chr14 (47539463-47539278)
               


               
               188-685, gnl|bosTau2|chr10 (15928255-15927758)
               

               
               188-685, gnl|Hg17|chr14 (20932195-20931698)
               

               
               188-685, gnl|Mm7|chr14 (47539187-47538690)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr10 (15928534-15928349)
               

               
               1-186, gnl|Hg17|chr14 (20932463-20932278)
               

               
               1-186, gnl|Mm7|chr14 (47539463-47539278)
               


               
               188-685, gnl|bosTau2|chr10 (15928255-15927758)
               

               
               188-685, gnl|Hg17|chr14 (20932195-20931698)
               

               
               188-685, gnl|Mm7|chr14 (47539187-47538690)

	308-587, AU118560 HEMBA1 Homo sapiens cDNA clone HEMBA1003873 5', mRNA (dbj\|AU118560.1\|), blast E-value=0, identity=97.5%
	308-587, BP460825 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP460825.1\|), blast E-value=0, identity=100%
	308-587, DA497980 FCBBF3 Homo sapiens cDNA clone FCBBF3011192 5', mRNA (dbj\|DA497980.1\|), blast E-value=0, identity=97.5%
	308-587, AGENCOURT_8485020 NIH_MGC_113 Homo sapiens cDNA clone IMAGE (gb\|BQ710833.1\|), blast E-value=0, identity=97.5%
	308-587, 17000424955892 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN405795.1\|), blast E-value=0, identity=97.5%
	308-587, nbd06a12.y1 Rabbit lens. Unnormalized (nbd) Oryctolagus cuniculus (gb\|EB381124.1\|), blast E-value=0, identity=97.5%

	1-186, gnl\|bosTau2\|chr10 (15928534-15928349)
	1-186, gnl\|Hg17\|chr14 (20932463-20932278)
	1-186, gnl\|Mm7\|chr14 (47539463-47539278)

	188-685, gnl\|bosTau2\|chr10 (15928255-15927758)
	188-685, gnl\|Hg17\|chr14 (20932195-20931698)
	188-685, gnl\|Mm7\|chr14 (47539187-47538690)