Non-Coding RNA Search

Ova1-OVRM10154A06

Sequence:


               
               AGTTTCAGTGCGGCGGGCCCGGCAAGTCCAGTTGCTGTGCTCAGGTGCCGCGGCGCCCAA
GGGCCGAGGCGGAAGTAGGGCGGCCACTTGAGGGGCAGAGGGTACGCGGTCGGCGGTCGC
GGGGTGCCAACGAGGGGCGCGGGACTCAGGAAGGGCGCGTGCGCGGCCATAGGCCCCGGG
GGAGAAGGCCGGGCAAGGCCAGGCCAGGGGGCCGGTGGTCCGAGTATCCAGCTTGGGAGA
TGCACAAGAAGAAGGGACCTTCGGGACCTCCAGGCCGAGGTGCCGCCACCGCTCGCCAGC
TGGGCCTGCTGGTTGACCTCTCCCCAGATGGCCTGATGATCCCTGAGGATGGAGTTAATG
ACGAGGAACTGGAGGCTGAGTTCTTGGCCTTGGTGGGGGGCCAGCCCCAAGCCTTGGAGA
AGCTTAAAGGCAAAGGTCCCCTGCCCATGGAGGCCATTGAGAAGATGGCCAGCCTGTGCA
TGAGAGACCCGGATGAGGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTTTCAGTGCGGCGGGCCCGGCAAGTCCAGTTGCTGTGCTCAGGTGCCGCGGCGCCCAA
GGGCCGAGGCGGAAGTAGGGCGGCCACTTGAGGGGCAGAGGGTACGCGGTCGGCGGTCGC
GGGGTGCCAACGAGGGGCGCGGGACTCAGGAAGGGCGCGTGCGCGGCCATAGGCCCCGGG
GGAGAAGGCCGGGCAAGGCCAGGCCAGGGGGCCGGTGGTCCGAGTATCCAGCTTGGGAGA
TGCACAAGAAGAAGGGACCTTCGGGACCTCCAGGCCGAGGTGCCGCCACCGCTCGCCAGC
TGGGCCTGCTGGTTGACCTCTCCCCAGATGGCCTGATGATCCCTGAGGATGGAGTTAATG
ACGAGGAACTGGAGGCTGAGTTCTTGGCCTTGGTGGGGGGCCAGCCCCAAGCCTTGGAGA
AGCTTAAAGGCAAAGGTCCCCTGCCCATGGAGGCCATTGAGAAGATGGCCAGCCTGTGCA
TGAGAGACCCGGATGAGGAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-238, - strand, RNAz p=0.507828

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-238, - strand, RNAz p=0.507828

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-308, gnl|bosTau2|chr7 (7898509-7898203)
               

               
               1-308, gnl|canFam2|chr20 (51567742-51567359)
               

               
               1-308, gnl|hg17|chr19 (13877857-13878214)
               

               
               1-308, gnl|Hg17|chr19 (13878016-13878323)
               

               
               1-308, gnl|loxAfr1|scaffold_14073 (45248-45620)
               

               
               1-308, gnl|mm7|chr8 (82730458-82730134)
               

               
               1-308, gnl|Mm7|chr8 (82730301-82730022)
               

               
               1-308, gnl|monDom2|scaffold_159 (1173054-1173393)
               

               
               1-308, gnl|oryCun1|scaffold_188587 (204-579)
               

               
               1-308, gnl|panTro1|chr20 (14509551-14509908)
               

               
               1-308, gnl|rheMac2|chr19 (13592120-13592476)
               

               
               1-308, gnl|rn3|chr19 (25700404-25700726)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-308, gnl|bosTau2|chr7 (7898509-7898203)
               

               
               1-308, gnl|canFam2|chr20 (51567742-51567359)
               

               
               1-308, gnl|hg17|chr19 (13877857-13878214)
               

               
               1-308, gnl|Hg17|chr19 (13878016-13878323)
               

               
               1-308, gnl|loxAfr1|scaffold_14073 (45248-45620)
               

               
               1-308, gnl|mm7|chr8 (82730458-82730134)
               

               
               1-308, gnl|Mm7|chr8 (82730301-82730022)
               

               
               1-308, gnl|monDom2|scaffold_159 (1173054-1173393)
               

               
               1-308, gnl|oryCun1|scaffold_188587 (204-579)
               

               
               1-308, gnl|panTro1|chr20 (14509551-14509908)
               

               
               1-308, gnl|rheMac2|chr19 (13592120-13592476)
               

               
               1-308, gnl|rn3|chr19 (25700404-25700726)

	1-308, gnl\|bosTau2\|chr7 (7898509-7898203)
	1-308, gnl\|canFam2\|chr20 (51567742-51567359)
	1-308, gnl\|hg17\|chr19 (13877857-13878214)
	1-308, gnl\|Hg17\|chr19 (13878016-13878323)
	1-308, gnl\|loxAfr1\|scaffold_14073 (45248-45620)
	1-308, gnl\|mm7\|chr8 (82730458-82730134)
	1-308, gnl\|Mm7\|chr8 (82730301-82730022)
	1-308, gnl\|monDom2\|scaffold_159 (1173054-1173393)
	1-308, gnl\|oryCun1\|scaffold_188587 (204-579)
	1-308, gnl\|panTro1\|chr20 (14509551-14509908)
	1-308, gnl\|rheMac2\|chr19 (13592120-13592476)
	1-308, gnl\|rn3\|chr19 (25700404-25700726)