Non-Coding RNA Search

Ova1-OVRM10157B11

Sequence:


               
               TTTTGCCTCTTCCCTTCATGCTTACTTTGAAGGCTATAAATAGCAGTGTTTTTTAAAGAC
CTTAAAGGTCCAACCATTTACAAACACATATTTGAGTAAAGTTATGATGGTAACAGTGAA
CATATGTTGAGTACATGCTACACACTAAGCCCAGAGGGTCAGTGCTTTTATATACTTTTT
CTCCAGGTGTCCCTCACAACAGCCCATGAGAGGCTAAGGGACCTGCCCAAGGTCATAGCT
GGAGAAGGACAGAATAGAGACTGTACCTGGGCAGCCCAGCCCAGAAGCTGTGGTCGTAAA
CACATCTCAGAAACCTTTTAAATCAGTGAAACCAAGCTAAACGTTATAAGACATCTTCCT
ATTTTCCTCATTTTATCCAGCATTTTTCTGTGAACATTTGGTATTTTCCTTTCATTTGTA
TTTGTGGTGTGAATGAGGAACAGATCTCATTCTTTACAAATGAATGAAAATTATATCTAG
ATCCCAGAAATTAGTGTGTCCCCATTTGTACAAAGTTCAGGGTAGCACACTCTGTCCATA
CATTGGAGGGGGAATAGGCAGATGATTATAACTTGGCATTGTGCTTCTTTATTTAAAATG
TTTCTGTTGATAAATTACACACATTCATTTATGGAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGCCTCTTCCCTTCATGCTTACTTTGAAGGCTATAAATAGCAGTGTTTTTTAAAGAC
CTTAAAGGTCCAACCATTTACAAACACATATTTGAGTAAAGTTATGATGGTAACAGTGAA
CATATGTTGAGTACATGCTACACACTAAGCCCAGAGGGTCAGTGCTTTTATATACTTTTT
CTCCAGGTGTCCCTCACAACAGCCCATGAGAGGCTAAGGGACCTGCCCAAGGTCATAGCT
GGAGAAGGACAGAATAGAGACTGTACCTGGGCAGCCCAGCCCAGAAGCTGTGGTCGTAAA
CACATCTCAGAAACCTTTTAAATCAGTGAAACCAAGCTAAACGTTATAAGACATCTTCCT
ATTTTCCTCATTTTATCCAGCATTTTTCTGTGAACATTTGGTATTTTCCTTTCATTTGTA
TTTGTGGTGTGAATGAGGAACAGATCTCATTCTTTACAAATGAATGAAAATTATATCTAG
ATCCCAGAAATTAGTGTGTCCCCATTTGTACAAAGTTCAGGGTAGCACACTCTGTCCATA
CATTGGAGGGGGAATAGGCAGATGATTATAACTTGGCATTGTGCTTCTTTATTTAAAATG
TTTCTGTTGATAAATTACACACATTCATTTATGGAAATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               378-489, - strand, RNAz p=0.941671

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               378-489, - strand, RNAz p=0.941671

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               465-559, + strand, RNAmicro p=0.944994

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               465-559, + strand, RNAmicro p=0.944994

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               8-527, gnl|bosTau2|chr11 (48844532-48845037)
               

               
               8-527, gnl|Hg17|chr2 (69639553-69638977)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-527, gnl|bosTau2|chr11 (48844532-48845037)
               

               
               8-527, gnl|Hg17|chr2 (69639553-69638977)

	8-527, gnl\|bosTau2\|chr11 (48844532-48845037)
	8-527, gnl\|Hg17\|chr2 (69639553-69638977)