Non-Coding RNA Search

Ova1-OVRM10157G05

Sequence:


               
               AGCAAGTTCTTGCTTGAATAATGTGTTAGGATGCATTCATGCACCTTTGACAATAGTAAT
CACCAAAATATGGCAAAGTCTTACCTTTGACAATGCAAACCCCTCAAGCTTAAAAATACT
TTGAGAAAAATCATAACACCTCCATGTTTTTATGTAACTTCCCCCAGTGCTATATATATG
AATTACAATATTAATTTTTAAGTTCCTATTTCCAGGTTTAATATTAAAAGGAAGAAATAC
TACTTTTATAAGCACAAATCACTGCAGTATTACATCCTGCTATATACCAACAATCCCAAA
TCCATTCTATCCATCTTATTGACAGAAAACAGTTAGACTAAGAATAAAGGACTTACTTTC
TTGATAGAAGGCTGTCTCCAGGGCCCCAAATAAAAATGCATGAAACAAATTTCAAAGAAC
TTGCCTGTTGAAGGTAGCTCAGAGAGTTCCTTTGTATAATAGATTACATATCCTTGCCCA
GCCTCTCAAACTAAAGACATAAAATGTCTTCGTCCTGCTTGCCCCACCTTTCCATCAGTG
GTCTACAACAATCTCTCTTGCTGCACTAGCTTTTAATAAGCAGACCTCTACTTTGTAGAA
CTTCCTCATGGAAAGGAACAGTTTTGCTTTGCTTCTTTCAGTCTGACCACGTTGATGAAT
TTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAAGTTCTTGCTTGAATAATGTGTTAGGATGCATTCATGCACCTTTGACAATAGTAAT
CACCAAAATATGGCAAAGTCTTACCTTTGACAATGCAAACCCCTCAAGCTTAAAAATACT
TTGAGAAAAATCATAACACCTCCATGTTTTTATGTAACTTCCCCCAGTGCTATATATATG
AATTACAATATTAATTTTTAAGTTCCTATTTCCAGGTTTAATATTAAAAGGAAGAAATAC
TACTTTTATAAGCACAAATCACTGCAGTATTACATCCTGCTATATACCAACAATCCCAAA
TCCATTCTATCCATCTTATTGACAGAAAACAGTTAGACTAAGAATAAAGGACTTACTTTC
TTGATAGAAGGCTGTCTCCAGGGCCCCAAATAAAAATGCATGAAACAAATTTCAAAGAAC
TTGCCTGTTGAAGGTAGCTCAGAGAGTTCCTTTGTATAATAGATTACATATCCTTGCCCA
GCCTCTCAAACTAAAGACATAAAATGTCTTCGTCCTGCTTGCCCCACCTTTCCATCAGTG
GTCTACAACAATCTCTCTTGCTGCACTAGCTTTTAATAAGCAGACCTCTACTTTGTAGAA
CTTCCTCATGGAAAGGAACAGTTTTGCTTTGCTTCTTTCAGTCTGACCACGTTGATGAAT
TTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               341-457, - strand, RNAz p=0.599629
               

               
               538-655, - strand, RNAz p=0.725405

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               341-457, - strand, RNAz p=0.599629
               

               
               538-655, - strand, RNAz p=0.725405

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               106-655, gnl|bosTau2|chr10 (18613613-18613063)
               

               
               106-655, gnl|canFam2|chr30 (7466733-7467139)
               

               
               106-655, gnl|dasNov1|scaffold_28203 (43516-43879)
               

               
               106-655, gnl|hg17|chr15 (35025075-35025420)
               

               
               106-655, gnl|Hg17|chr15 (35025631-35025103)
               

               
               106-655, gnl|loxAfr1|scaffold_3395 (59487-59139)
               

               
               106-655, gnl|mm7|chr2 (115657834-115658168)
               

               
               106-655, gnl|monDom2|scaffold_12 (6913007-6912662)
               

               
               106-655, gnl|panTro1|chr16 (34829726-34830089)
               

               
               106-655, gnl|rheMac2|chr7 (15271938-15272304)
               

               
               106-655, gnl|rn3|chr3 (101865710-101866032)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-655, gnl|bosTau2|chr10 (18613613-18613063)
               

               
               106-655, gnl|canFam2|chr30 (7466733-7467139)
               

               
               106-655, gnl|dasNov1|scaffold_28203 (43516-43879)
               

               
               106-655, gnl|hg17|chr15 (35025075-35025420)
               

               
               106-655, gnl|Hg17|chr15 (35025631-35025103)
               

               
               106-655, gnl|loxAfr1|scaffold_3395 (59487-59139)
               

               
               106-655, gnl|mm7|chr2 (115657834-115658168)
               

               
               106-655, gnl|monDom2|scaffold_12 (6913007-6912662)
               

               
               106-655, gnl|panTro1|chr16 (34829726-34830089)
               

               
               106-655, gnl|rheMac2|chr7 (15271938-15272304)
               

               
               106-655, gnl|rn3|chr3 (101865710-101866032)

	341-457, - strand, RNAz p=0.599629
	538-655, - strand, RNAz p=0.725405

	106-655, gnl\|bosTau2\|chr10 (18613613-18613063)
	106-655, gnl\|canFam2\|chr30 (7466733-7467139)
	106-655, gnl\|dasNov1\|scaffold_28203 (43516-43879)
	106-655, gnl\|hg17\|chr15 (35025075-35025420)
	106-655, gnl\|Hg17\|chr15 (35025631-35025103)
	106-655, gnl\|loxAfr1\|scaffold_3395 (59487-59139)
	106-655, gnl\|mm7\|chr2 (115657834-115658168)
	106-655, gnl\|monDom2\|scaffold_12 (6913007-6912662)
	106-655, gnl\|panTro1\|chr16 (34829726-34830089)
	106-655, gnl\|rheMac2\|chr7 (15271938-15272304)
	106-655, gnl\|rn3\|chr3 (101865710-101866032)