Non-Coding RNA Search

Ova1-OVRM10163G03

Sequence:


               
               AATTAAACAATGAGGAGCGTCCCCTGGCACATCTGTAAACCTCCTTCTGAGGCCAGTTTA
GCCCACAAACTGCTCCATTCTTACCCCCATTCACTTGTAAATGGCCCCTCTGATGTCCCC
TCTACTCTCTCTCCTCCTTCACTCCCCCCATCTCAGCTCTTTCTTTCCTTTCAACTGAGG
CCTGGGGTGGGCTCCCAGTAGAGCCCTGTCCCGGAGCCTGGTGGACTTGGGGACAGGGGC
AGCCTAGACTGTGGAGAAGACCAGGGGGAGAGCTGCCTGGCGTGGTCCCTGGGGACTGCT
GGACTTGGTGGGTTGGAGGGACAGGAAGCCAGGGTTCTGGCTGGGGTCTGCCGCAGCCAG
GACACAGTGTCAGATGAGACCTGGAGATGGTTCTCTTTCAGCCCCCAAAGCTGGGATCAG
CACCGTTGAGGGCCTGGCCACAGTGGGTGGTCATGGTCCCCAGACAAGGACAGATCCACT
GGGGCCCAGGGTTCTGGTGGGAGCCTTCTTAGGTGTCCTCGAGAAGGGGCGTGCGTGGTG
CCCCTTTCCCAGCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTAAACAATGAGGAGCGTCCCCTGGCACATCTGTAAACCTCCTTCTGAGGCCAGTTTA
GCCCACAAACTGCTCCATTCTTACCCCCATTCACTTGTAAATGGCCCCTCTGATGTCCCC
TCTACTCTCTCTCCTCCTTCACTCCCCCCATCTCAGCTCTTTCTTTCCTTTCAACTGAGG
CCTGGGGTGGGCTCCCAGTAGAGCCCTGTCCCGGAGCCTGGTGGACTTGGGGACAGGGGC
AGCCTAGACTGTGGAGAAGACCAGGGGGAGAGCTGCCTGGCGTGGTCCCTGGGGACTGCT
GGACTTGGTGGGTTGGAGGGACAGGAAGCCAGGGTTCTGGCTGGGGTCTGCCGCAGCCAG
GACACAGTGTCAGATGAGACCTGGAGATGGTTCTCTTTCAGCCCCCAAAGCTGGGATCAG
CACCGTTGAGGGCCTGGCCACAGTGGGTGGTCATGGTCCCCAGACAAGGACAGATCCACT
GGGGCCCAGGGTTCTGGTGGGAGCCTTCTTAGGTGTCCTCGAGAAGGGGCGTGCGTGGTG
CCCCTTTCCCAGCAGCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-269, - strand, RNAz p=0.992782
               

               
               380-537, - strand, RNAz p=0.922327

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-269, - strand, RNAz p=0.992782
               

               
               380-537, - strand, RNAz p=0.922327

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               156-246, + strand, RNAmicro p=0.999508

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               156-246, + strand, RNAmicro p=0.999508

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-557, gnl|bosTau2|chr11 (78268135-78268721)
               

               
               1-557, gnl|Hg17|chr9 (128225071-128225759)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-557, gnl|bosTau2|chr11 (78268135-78268721)
               

               
               1-557, gnl|Hg17|chr9 (128225071-128225759)

	120-269, - strand, RNAz p=0.992782
	380-537, - strand, RNAz p=0.922327

	1-557, gnl\|bosTau2\|chr11 (78268135-78268721)
	1-557, gnl\|Hg17\|chr9 (128225071-128225759)