Non-Coding RNA Search

Ova1-OVRM10165A12

Sequence:


               
               AGACGCGACGACTCTGAGAACCTGTCAAGCCCTCCTGCTCGTACTTGCTCAGAGGCGGCT
CCCTGGAGGCGGAAGCTGAACTTTCTGAGAGAGGCTTATCCCGGGGTCGGAAGCCTGGAT
CCCCGCCCAGCGGGTGGGCACAATGCGGCTGGGCTCCGGGCTCCGGGACCTTCGCCGCCT
GCTGCGTAAGGATCGAGGTGCTCGGGCTCGCGCTCTTCCTTCGGGGATTCTTCCCGGCTC
CTGTTTCTTCGTCTTCTGGCACGGAGCGACAAGTAGAGCACCCAGCGCCCGAACCCTCGA
CTGGTACGGATCACTCCCCGGGCGTCTCTGCTCCCCAGGCCCCACTTTCCCCGGAGAAGC
GTCCTGATGAGCCTTGCCTCTAGGACGTCTTCTCGGGGCTCTGGGCTGGTCTCTTCCATT
CTGGTTCCCACCCCCCTATTTTCCCTTCTTACTGCTCCAGCTTCCTTTTCTGTGTCTTAG
AACTTTGTGGCAAACACCAGTACCGGCCCTACTGAGATCCTCCTCCCCGGTCACCACCAA
GTAAGCTGTCCACACTCGTAAAAAGGAAGCCTCTCCCCACTTCTACTCATACAGGGACAC
CCCAACCCCATTCCCTGAGCATATGTTTCAGTCACTCCCTGTTTCCCGGCTCCCTTTTTG
CTCAGTAAGACACAGCAGATAAAATTCCTGCCGACCTCTCGTGTTTTCTCCTGNCACATT
CCTGTGACACCCCCGTTTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGCGACGACTCTGAGAACCTGTCAAGCCCTCCTGCTCGTACTTGCTCAGAGGCGGCT
CCCTGGAGGCGGAAGCTGAACTTTCTGAGAGAGGCTTATCCCGGGGTCGGAAGCCTGGAT
CCCCGCCCAGCGGGTGGGCACAATGCGGCTGGGCTCCGGGCTCCGGGACCTTCGCCGCCT
GCTGCGTAAGGATCGAGGTGCTCGGGCTCGCGCTCTTCCTTCGGGGATTCTTCCCGGCTC
CTGTTTCTTCGTCTTCTGGCACGGAGCGACAAGTAGAGCACCCAGCGCCCGAACCCTCGA
CTGGTACGGATCACTCCCCGGGCGTCTCTGCTCCCCAGGCCCCACTTTCCCCGGAGAAGC
GTCCTGATGAGCCTTGCCTCTAGGACGTCTTCTCGGGGCTCTGGGCTGGTCTCTTCCATT
CTGGTTCCCACCCCCCTATTTTCCCTTCTTACTGCTCCAGCTTCCTTTTCTGTGTCTTAG
AACTTTGTGGCAAACACCAGTACCGGCCCTACTGAGATCCTCCTCCCCGGTCACCACCAA
GTAAGCTGTCCACACTCGTAAAAAGGAAGCCTCTCCCCACTTCTACTCATACAGGGACAC
CCCAACCCCATTCCCTGAGCATATGTTTCAGTCACTCCCTGTTTCCCGGCTCCCTTTTTG
CTCAGTAAGACACAGCAGATAAAATTCCTGCCGACCTCTCGTGTTTTCTCCTGNCACATT
CCTGTGACACCCCCGTTTTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               318-436, - strand, RNAz p=0.916135

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               318-436, - strand, RNAz p=0.916135

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               260-371, - strand, RNAmicro p=0.934896

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               260-371, - strand, RNAmicro p=0.934896

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               10-742, gnl|bosTau2|chr6 (63673083-63673790)
               

               
               10-742, gnl|Hg17|chr4 (482994-483705)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-742, gnl|bosTau2|chr6 (63673083-63673790)
               

               
               10-742, gnl|Hg17|chr4 (482994-483705)

	10-742, gnl\|bosTau2\|chr6 (63673083-63673790)
	10-742, gnl\|Hg17\|chr4 (482994-483705)