Non-Coding RNA Search

Ova1-OVRM10165D08

Sequence:


               
               CAAGTAATGTGTACAATTTTTAAAAACACTAAAATTACTGAATCCCCATATTATGTTTTC
ATGCTGCTCTTTCAGAAACTCTGCTAATACAGTACTCCAATAAACCGATCTTGGTCCTGG
CAGGCCCTGTTGGAACTAATGGGCCCTGACAGTTCTTCAGTTAAAAATTATACATGAGGG
TCACTTTCCCTTAAATTATCTATTGTATGCCAGCTGTTCACAACTGCAGCGCTTCACTTT
CTTTGCATTGCTAGAAATGTCTCATTTTCTCATAATATCCATAGCAACTCTTCTTGTGGA
TGGCACCGAAGTTAGTGCCACTTCAAGCACATACCTTTGTGGAAATCACGCCAGCATTGC
ATTTTTCCATTTTCTTTACTTTTATTTTTTTGCTTGTGGAAAATGTCTAGATGGCTCATT
TTGCCTGTTTCAGGCCACAGCACTTGAGTTATGTTATAATTTCTCGTTTGCTGCACAACT
TTATTCTATTTTTGTGCTCTTAAATGACGCAGCTTCAAGTACCCCTGAGTGGCACTTCCG
TGCTGTGAACGTTATCAAAGGCAACCTCAGACAGCTAGAACTCCCGGTTTGGGGGGTTTT
GTTTTGTTTTTTTGGTGGGGAGGGGGAAAGAGGAGTCATCACCAAGGGTCGTCTTTTGTT
CAGCAGGCCTATTAAAACGATGGCCAATAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGTAATGTGTACAATTTTTAAAAACACTAAAATTACTGAATCCCCATATTATGTTTTC
ATGCTGCTCTTTCAGAAACTCTGCTAATACAGTACTCCAATAAACCGATCTTGGTCCTGG
CAGGCCCTGTTGGAACTAATGGGCCCTGACAGTTCTTCAGTTAAAAATTATACATGAGGG
TCACTTTCCCTTAAATTATCTATTGTATGCCAGCTGTTCACAACTGCAGCGCTTCACTTT
CTTTGCATTGCTAGAAATGTCTCATTTTCTCATAATATCCATAGCAACTCTTCTTGTGGA
TGGCACCGAAGTTAGTGCCACTTCAAGCACATACCTTTGTGGAAATCACGCCAGCATTGC
ATTTTTCCATTTTCTTTACTTTTATTTTTTTGCTTGTGGAAAATGTCTAGATGGCTCATT
TTGCCTGTTTCAGGCCACAGCACTTGAGTTATGTTATAATTTCTCGTTTGCTGCACAACT
TTATTCTATTTTTGTGCTCTTAAATGACGCAGCTTCAAGTACCCCTGAGTGGCACTTCCG
TGCTGTGAACGTTATCAAAGGCAACCTCAGACAGCTAGAACTCCCGGTTTGGGGGGTTTT
GTTTTGTTTTTTTGGTGGGGAGGGGGAAAGAGGAGTCATCACCAAGGGTCGTCTTTTGTT
CAGCAGGCCTATTAAAACGATGGCCAATAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               39-238, - strand, RNAz p=0.993751
               

               
               437-617, - strand, RNAz p=0.97016

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-238, - strand, RNAz p=0.993751
               

               
               437-617, - strand, RNAz p=0.97016

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-691, gnl|bosTau2|chr2 (35576225-35575557)
               

               
               1-691, gnl|Hg17|chr2 (145054312-145053610)
               

               
               1-691, gnl|Mm7|chr2 (45063096-45062418)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-691, gnl|bosTau2|chr2 (35576225-35575557)
               

               
               1-691, gnl|Hg17|chr2 (145054312-145053610)
               

               
               1-691, gnl|Mm7|chr2 (45063096-45062418)

	39-238, - strand, RNAz p=0.993751
	437-617, - strand, RNAz p=0.97016

	1-691, gnl\|bosTau2\|chr2 (35576225-35575557)
	1-691, gnl\|Hg17\|chr2 (145054312-145053610)
	1-691, gnl\|Mm7\|chr2 (45063096-45062418)