Non-Coding RNA Search

Ova1-OVRM10169F09

Sequence:


               
               TGTGAGTGGGCTGTGAAGGAGCCCCTCTCACGGGAGAGGAGAGCGGCAGAGACTCGGGCA
GTACGCGTGTGGGACCCCAAAGGGCTGATTATGCTTTCTCAGGAAAGGCAGCCAGCCAAC
AGTTATGACTGGGCCGCCTCTGAGTGCGGAACCTGGAATCGGGCCTCCTGGAATGATCGC
AAGAGCCACGGAAGACTCAGCCCGGTCCTTGAGGAGCAAAGACCGATGGGGCCGCCAGAG
CCATGGCTCTTGTTCAGTGTGTGTGGAGGTTGAGGAACGGCCGTGGCAGACCAAGGAGGC
CGACCAAGGAGCCAGGCCCGGAAGGCAACCTGGAGGAGTTGGCTTTGAGCAGGGATTTCT
CAAGGGCTTATTATTTGGTGGAGAGTGATGTCGTGTAAAAACACTGATTTGAGTGTAAGC
AGTTTTGCCTGGTTGGAGCCATTTAATAAGTCCAGTCTGCAGCCTGGGGTGTTTTCTTTA
GAAGAGCAGCCTTGAGTTGAGGGTGTTTATGGACTCCTCGCTGTGTGCAGAGGGCGTGAT
ACGTTAGGCGGATTTACTGGAACATCTCGGAAAGACCACTGGCTCTGTACCAGCTTTCCC
TGTGAATTTCCAACCTCAGTCCTCTCCTTTTTCCTAGGACTGCCTGTAGCCCAGACATTT
CCTTTCTGCCCTTGCTTCTCCTGTTTGAGAGTCCTCCTCTGGGGCTGCAGCTCGTCTCCT
CAGAGCTGGATCTGTGTGCCCGACAGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAGTGGGCTGTGAAGGAGCCCCTCTCACGGGAGAGGAGAGCGGCAGAGACTCGGGCA
GTACGCGTGTGGGACCCCAAAGGGCTGATTATGCTTTCTCAGGAAAGGCAGCCAGCCAAC
AGTTATGACTGGGCCGCCTCTGAGTGCGGAACCTGGAATCGGGCCTCCTGGAATGATCGC
AAGAGCCACGGAAGACTCAGCCCGGTCCTTGAGGAGCAAAGACCGATGGGGCCGCCAGAG
CCATGGCTCTTGTTCAGTGTGTGTGGAGGTTGAGGAACGGCCGTGGCAGACCAAGGAGGC
CGACCAAGGAGCCAGGCCCGGAAGGCAACCTGGAGGAGTTGGCTTTGAGCAGGGATTTCT
CAAGGGCTTATTATTTGGTGGAGAGTGATGTCGTGTAAAAACACTGATTTGAGTGTAAGC
AGTTTTGCCTGGTTGGAGCCATTTAATAAGTCCAGTCTGCAGCCTGGGGTGTTTTCTTTA
GAAGAGCAGCCTTGAGTTGAGGGTGTTTATGGACTCCTCGCTGTGTGCAGAGGGCGTGAT
ACGTTAGGCGGATTTACTGGAACATCTCGGAAAGACCACTGGCTCTGTACCAGCTTTCCC
TGTGAATTTCCAACCTCAGTCCTCTCCTTTTTCCTAGGACTGCCTGTAGCCCAGACATTT
CCTTTCTGCCCTTGCTTCTCCTGTTTGAGAGTCCTCCTCTGGGGCTGCAGCTCGTCTCCT
CAGAGCTGGATCTGTGTGCCCGACAGTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               179-295, + strand, RNAz p=0.938711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-295, + strand, RNAz p=0.938711

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               65-191, - strand, RNAmicro p=0.998148

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               65-191, - strand, RNAmicro p=0.998148

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               20-749, gnl|bosTau2|chr4 (54316817-54317528)
               

               
               20-749, gnl|Hg17|chr7 (137125964-137125244)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-749, gnl|bosTau2|chr4 (54316817-54317528)
               

               
               20-749, gnl|Hg17|chr7 (137125964-137125244)

	20-749, gnl\|bosTau2\|chr4 (54316817-54317528)
	20-749, gnl\|Hg17\|chr7 (137125964-137125244)