Non-Coding RNA Search

Ova1-OVRM10175B12

Sequence:


               
               TTCAGCCTCGCCTCTGCGGTGCGCCACTGACCGCTCCGCGAGCCGGCGGGAGAAGATTAG
GGCTCCCGAGGTTACTTGCTCGGGGCTCAGGCCGCTCTCCCCCGACGCTCGGGCTGCTCG
GCCTATCTGGCTTTCGGCCTCCCTCTCGTCCTCCTTCTGCCCCCTCCCTTGCTCCTTCCC
GGCCGCGCCGCCTGCGCCCTCGCCTCCTGTCGCGCTGCTCCTCCGCCCTGCGCTCCTGGG
TCCCCGCAGTCCGGCTGGCTGTGTTGCGCGCGGGGCCCACTTTTTCGCCGCCGGTGGCGA
GTGGCTGGTGGGTNAGTCTTCCTGATGACGAGGTCCCTCCCGGGCTTTACGACACTGGGC
GACCTGGAACAGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGCCTCGCCTCTGCGGTGCGCCACTGACCGCTCCGCGAGCCGGCGGGAGAAGATTAG
GGCTCCCGAGGTTACTTGCTCGGGGCTCAGGCCGCTCTCCCCCGACGCTCGGGCTGCTCG
GCCTATCTGGCTTTCGGCCTCCCTCTCGTCCTCCTTCTGCCCCCTCCCTTGCTCCTTCCC
GGCCGCGCCGCCTGCGCCCTCGCCTCCTGTCGCGCTGCTCCTCCGCCCTGCGCTCCTGGG
TCCCCGCAGTCCGGCTGGCTGTGTTGCGCGCGGGGCCCACTTTTTCGCCGCCGGTGGCGA
GTGGCTGGTGGGTNAGTCTTCCTGATGACGAGGTCCCTCCCGGGCTTTACGACACTGGGC
GACCTGGAACAGGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-151, + strand, RNAz p=0.964875

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-151, + strand, RNAz p=0.964875

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               31-116, + strand, RNAmicro p=0.995696
               

               
               29-130, - strand, RNAmicro p=0.993392

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               31-116, + strand, RNAmicro p=0.995696
               

               
               29-130, - strand, RNAmicro p=0.993392

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-374, gnl|bosTau2|chr20 (16310378-16310012)
               

               
               1-374, gnl|Hg17|chr5 (50714879-50714497)
               

               
               1-374, gnl|Mm7|chr13 (113520169-113520496)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-374, gnl|bosTau2|chr20 (16310378-16310012)
               

               
               1-374, gnl|Hg17|chr5 (50714879-50714497)
               

               
               1-374, gnl|Mm7|chr13 (113520169-113520496)

	31-116, + strand, RNAmicro p=0.995696
	29-130, - strand, RNAmicro p=0.993392

	1-374, gnl\|bosTau2\|chr20 (16310378-16310012)
	1-374, gnl\|Hg17\|chr5 (50714879-50714497)
	1-374, gnl\|Mm7\|chr13 (113520169-113520496)