Non-Coding RNA Search

Ova1-OVRM10185C05

Sequence:


               
               TTGTAGCTGATGCCCACTATAGGAATGCTTTATCAGAGTGAAGCCTTTCTTTTGAAAAGA
GACGGAATTCCTTGTGAGGCTTCTCTTTGGGATGTATATGGGTGTGTACATATTATGATA
TGTGTTTATAATATAATATTTTCCCAAATGACTTCCTTTTTCACTTAGCCTCTCAAGGCC
CGAATGCTAGACCTTCTCCTTCCCTGCCTCCCCTCCAGCGCCAGGACTTCACTGATTCCT
CCTTGGAAAAGGACCCCCCTCGCCTGCTATCTTTAGCCATGTGATCTGCTCTGGGAGGCA
GCCTGCTTTCTCGAGCCCGAGTTTTGGCAACAGAGGAGAGGCTGTCGTGGCTCTCAAAGG
TTTTTCCCTGTAAAACCCAGGAAAGGCGACCGGGGGCTCATCTGTTGTATTCCAGTGACT
TCTCTGCTGGACCGCTCTCTCATTCCCATCTTACAAGCCTCACTAACACCAAGACCAGAG
AAGGCACGGTCCAGGGCCAGTGTTAGAAGTAGCCAGTTTGGGAAGGGGGTCGAGCTGTCG
TTATTTCCACGTAGGCTCTGAGACAGTGACATAGGAAACGACCCCTGCGGACTCCACGTG
ACCACTTCTATTCAACCTCTTCTCTTCTCCTCTGTTCAGGATTTTCAGTGAAAATGTTTC
CTTGATGAAGAACCCGCCGGCTGGTGAGGGCACGTGTAGCAGTGGCCCCTCCTGAGGGCG
CTCGCACAGGTGGTCTGCATGCACCCCTTTCTCTCTGGATCGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTAGCTGATGCCCACTATAGGAATGCTTTATCAGAGTGAAGCCTTTCTTTTGAAAAGA
GACGGAATTCCTTGTGAGGCTTCTCTTTGGGATGTATATGGGTGTGTACATATTATGATA
TGTGTTTATAATATAATATTTTCCCAAATGACTTCCTTTTTCACTTAGCCTCTCAAGGCC
CGAATGCTAGACCTTCTCCTTCCCTGCCTCCCCTCCAGCGCCAGGACTTCACTGATTCCT
CCTTGGAAAAGGACCCCCCTCGCCTGCTATCTTTAGCCATGTGATCTGCTCTGGGAGGCA
GCCTGCTTTCTCGAGCCCGAGTTTTGGCAACAGAGGAGAGGCTGTCGTGGCTCTCAAAGG
TTTTTCCCTGTAAAACCCAGGAAAGGCGACCGGGGGCTCATCTGTTGTATTCCAGTGACT
TCTCTGCTGGACCGCTCTCTCATTCCCATCTTACAAGCCTCACTAACACCAAGACCAGAG
AAGGCACGGTCCAGGGCCAGTGTTAGAAGTAGCCAGTTTGGGAAGGGGGTCGAGCTGTCG
TTATTTCCACGTAGGCTCTGAGACAGTGACATAGGAAACGACCCCTGCGGACTCCACGTG
ACCACTTCTATTCAACCTCTTCTCTTCTCCTCTGTTCAGGATTTTCAGTGAAAATGTTTC
CTTGATGAAGAACCCGCCGGCTGGTGAGGGCACGTGTAGCAGTGGCCCCTCCTGAGGGCG
CTCGCACAGGTGGTCTGCATGCACCCCTTTCTCTCTGGATCGCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-159, + strand, RNAz p=0.903047

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, + strand, RNAz p=0.903047

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               46-151, AV727989 HTC Homo sapiens cDNA clone HTCBQB05 5', mRNA sequence 
(dbj|AV727989.1|), blast E-value=1e-28, identity=91.51% 
               

               
               40-159, BP456889 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP456889.1|), blast E-value=0, identity=100% 
               

               
               46-155, UI-E-EJ0-ahm-d-17-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM674818.1|), blast E-value=6e-31, identity=91.82% 
               

               
               46-155, UI-E-EJ0-ahm-d-17-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM717538.1|), blast E-value=6e-31, identity=91.82% 
               

               
               46-151, UI-E-EJ1-ajt-b-01-0-UI.s1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|BQ184785.1|), blast E-value=1e-28, identity=91.51% 
               

               
               46-151, UI-E-EJ1-ajt-b-01-0-UI.r1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|BQ187696.1|), blast E-value=1e-28, identity=91.51%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               46-151, AV727989 HTC Homo sapiens cDNA clone HTCBQB05 5', mRNA sequence 
(dbj|AV727989.1|), blast E-value=1e-28, identity=91.51% 
               

               
               40-159, BP456889 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|BP456889.1|), blast E-value=0, identity=100% 
               

               
               46-155, UI-E-EJ0-ahm-d-17-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM674818.1|), blast E-value=6e-31, identity=91.82% 
               

               
               46-155, UI-E-EJ0-ahm-d-17-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM717538.1|), blast E-value=6e-31, identity=91.82% 
               

               
               46-151, UI-E-EJ1-ajt-b-01-0-UI.s1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|BQ184785.1|), blast E-value=1e-28, identity=91.51% 
               

               
               46-151, UI-E-EJ1-ajt-b-01-0-UI.r1 UI-E-EJ1 Homo sapiens cDNA clone 
(gb|BQ187696.1|), blast E-value=1e-28, identity=91.51%

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-614, gnl|bosTau2|chr3 (82207805-82208423)
               

               
               1-614, gnl|canFam2|chr25 (49998706-49999423)
               

               
               1-614, gnl|dasNov1|scaffold_6170 (292-969)
               

               
               1-614, gnl|hg17|chr2 (236816861-236817561)
               

               
               1-614, gnl|Hg17|chr2 (236817055-236817684)
               

               
               1-614, gnl|loxAfr1|scaffold_17580 (45169-44489)
               

               
               1-614, gnl|mm7|chr1 (89795674-89796354)
               

               
               1-614, gnl|panTro1|chr13 (127674433-127675129)
               

               
               1-614, gnl|rheMac2|chr12 (100008990-100009670)
               

               
               1-614, gnl|rn3|chr9 (89199096-89199785)

Aligned organism(s): 10 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-614, gnl|bosTau2|chr3 (82207805-82208423)
               

               
               1-614, gnl|canFam2|chr25 (49998706-49999423)
               

               
               1-614, gnl|dasNov1|scaffold_6170 (292-969)
               

               
               1-614, gnl|hg17|chr2 (236816861-236817561)
               

               
               1-614, gnl|Hg17|chr2 (236817055-236817684)
               

               
               1-614, gnl|loxAfr1|scaffold_17580 (45169-44489)
               

               
               1-614, gnl|mm7|chr1 (89795674-89796354)
               

               
               1-614, gnl|panTro1|chr13 (127674433-127675129)
               

               
               1-614, gnl|rheMac2|chr12 (100008990-100009670)
               

               
               1-614, gnl|rn3|chr9 (89199096-89199785)

	46-151, AV727989 HTC Homo sapiens cDNA clone HTCBQB05 5', mRNA sequence (dbj\|AV727989.1\|), blast E-value=1e-28, identity=91.51%
	40-159, BP456889 full-length enriched swine cDNA library, adult ovary Sus (dbj\|BP456889.1\|), blast E-value=0, identity=100%
	46-155, UI-E-EJ0-ahm-d-17-0-UI.s1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM674818.1\|), blast E-value=6e-31, identity=91.82%
	46-155, UI-E-EJ0-ahm-d-17-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM717538.1\|), blast E-value=6e-31, identity=91.82%
	46-151, UI-E-EJ1-ajt-b-01-0-UI.s1 UI-E-EJ1 Homo sapiens cDNA clone (gb\|BQ184785.1\|), blast E-value=1e-28, identity=91.51%
	46-151, UI-E-EJ1-ajt-b-01-0-UI.r1 UI-E-EJ1 Homo sapiens cDNA clone (gb\|BQ187696.1\|), blast E-value=1e-28, identity=91.51%

	1-614, gnl\|bosTau2\|chr3 (82207805-82208423)
	1-614, gnl\|canFam2\|chr25 (49998706-49999423)
	1-614, gnl\|dasNov1\|scaffold_6170 (292-969)
	1-614, gnl\|hg17\|chr2 (236816861-236817561)
	1-614, gnl\|Hg17\|chr2 (236817055-236817684)
	1-614, gnl\|loxAfr1\|scaffold_17580 (45169-44489)
	1-614, gnl\|mm7\|chr1 (89795674-89796354)
	1-614, gnl\|panTro1\|chr13 (127674433-127675129)
	1-614, gnl\|rheMac2\|chr12 (100008990-100009670)
	1-614, gnl\|rn3\|chr9 (89199096-89199785)