Non-Coding RNA Search

Ova1-OVRM10186E07

Sequence:


               
               TGTTTAGAACCTCATGTGTGGCCACGAAAAGTAATTAATGGAGATGCTTTTACTCAAGGA
TAACTAGATGGACACTTTATTCAGGTCACATAACCATCATGACTGTTTCAAGTTCAAACT
CATTTGCATTTTGCTTCCCTTTTGCACAGATACAGTCTCACATTCCCTGGCAATTTGTTT
ATAATCGCCATGACAATTTTACATTCCCCAGCATTTCACAGAAATCCATGACATAGGAGT
ATGAATGCAAACGTATTAAAAAAAAAAACCCTCAGGTGGTTGTTAATTTTTGGCACTGTG
TAATTACACTAGTTTTTTTTTTTAATGTTATCTTTTGCCAGTATCTAATTAACAAAGCCA
TCTGCTGAAAGAGCCCTGGCCCATCTGCCTAGAATGTTGTTCTCTTCATTTTTATGAAAA
GTATCTGCCTTTGCTGGTCCCTGTCTAATTAACTTCTTTCACTGCAGAATGTGATCATAC
ACAGCTTTGTTTATACACTTCCCAGATCTGTGGATTTATATGTATGTAACTCGTGCATAA
AAAGAGCCGATCTTTTTTTTTTTTTTCTTTCTTGCATCTGATTTTCTCCCAAGATCACAG
CTCTGGCTACCATAACTGGGCAGGTATGTGTGCCTGACAGAGGCGTGTACTGTTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTAGAACCTCATGTGTGGCCACGAAAAGTAATTAATGGAGATGCTTTTACTCAAGGA
TAACTAGATGGACACTTTATTCAGGTCACATAACCATCATGACTGTTTCAAGTTCAAACT
CATTTGCATTTTGCTTCCCTTTTGCACAGATACAGTCTCACATTCCCTGGCAATTTGTTT
ATAATCGCCATGACAATTTTACATTCCCCAGCATTTCACAGAAATCCATGACATAGGAGT
ATGAATGCAAACGTATTAAAAAAAAAAACCCTCAGGTGGTTGTTAATTTTTGGCACTGTG
TAATTACACTAGTTTTTTTTTTTAATGTTATCTTTTGCCAGTATCTAATTAACAAAGCCA
TCTGCTGAAAGAGCCCTGGCCCATCTGCCTAGAATGTTGTTCTCTTCATTTTTATGAAAA
GTATCTGCCTTTGCTGGTCCCTGTCTAATTAACTTCTTTCACTGCAGAATGTGATCATAC
ACAGCTTTGTTTATACACTTCCCAGATCTGTGGATTTATATGTATGTAACTCGTGCATAA
AAAGAGCCGATCTTTTTTTTTTTTTTCTTTCTTGCATCTGATTTTCTCCCAAGATCACAG
CTCTGGCTACCATAACTGGGCAGGTATGTGTGCCTGACAGAGGCGTGTACTGTTTTGC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               262-375, - strand, RNAz p=0.939876
               

               
               496-615, + strand, RNAz p=0.983251

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               262-375, - strand, RNAz p=0.939876
               

               
               496-615, + strand, RNAz p=0.983251

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               297-388, + strand, RNAmicro p=0.999937

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               297-388, + strand, RNAmicro p=0.999937

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-631, gnl|bosTau2|chr20 (37375961-37375337)
               

               
               1-631, gnl|Hg17|chr5 (9295418-9294802)
               

               
               1-631, gnl|Mm7|chr15 (32645620-32646220)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-631, gnl|bosTau2|chr20 (37375961-37375337)
               

               
               1-631, gnl|Hg17|chr5 (9295418-9294802)
               

               
               1-631, gnl|Mm7|chr15 (32645620-32646220)

	262-375, - strand, RNAz p=0.939876
	496-615, + strand, RNAz p=0.983251

	1-631, gnl\|bosTau2\|chr20 (37375961-37375337)
	1-631, gnl\|Hg17\|chr5 (9295418-9294802)
	1-631, gnl\|Mm7\|chr15 (32645620-32646220)