Non-Coding RNA Search

Ova1-OVRM10186H06

Sequence:


               
               AAAAAAAAAAAATTCTGGTAAAGACTTTTTGATATGTTTCCCAGAAATTGAGATAGTGAA
TTTCTCCAGTGTCTATATTGGTCAGGTGGTTTCCAATGCTTTGCCCTCAAAAAAATTGAA
GGAGGATTGAATTGAGTTTTAGTGATAATTTTAAATAATTTTGCTTTCAGATCACTGTGT
AATATTTGACATAATAACTTGGAAAGATTCTTAAAAAGTTGCATAACATTGCTATGAGAC
AGTGTTCATTCTTCTGTGAACAAGTCTTCTTAGTACTAACATCTCTAAAAATAAGACCTA
AAAAGAAATTTGACACTGAACACTTTCTCATTCTAGCAGGTGAAATTAATGCACGGATAT
ACAAACTATTTTTTAAATTTTTTGTTGGTTAAAAAGATGTAGTTGTAggagttctcttgt
ggcaccgctggttaaggatccagcattatcagtgtagtggcttgggtcactgttgtggta
caggttcagtccctagcccCTAACTTCCATATGCCGCAGATGTGGGTAGTTCTAATAGTG
TTCTGTGTTTATATTTAATAATGGAGTATAATAATAATGATAAGTAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAATTCTGGTAAAGACTTTTTGATATGTTTCCCAGAAATTGAGATAGTGAA
TTTCTCCAGTGTCTATATTGGTCAGGTGGTTTCCAATGCTTTGCCCTCAAAAAAATTGAA
GGAGGATTGAATTGAGTTTTAGTGATAATTTTAAATAATTTTGCTTTCAGATCACTGTGT
AATATTTGACATAATAACTTGGAAAGATTCTTAAAAAGTTGCATAACATTGCTATGAGAC
AGTGTTCATTCTTCTGTGAACAAGTCTTCTTAGTACTAACATCTCTAAAAATAAGACCTA
AAAAGAAATTTGACACTGAACACTTTCTCATTCTAGCAGGTGAAATTAATGCACGGATAT
ACAAACTATTTTTTAAATTTTTTGTTGGTTAAAAAGATGTAGTTGTAggagttctcttgt
ggcaccgctggttaaggatccagcattatcagtgtagtggcttgggtcactgttgtggta
caggttcagtccctagcccCTAACTTCCATATGCCGCAGATGTGGGTAGTTCTAATAGTG
TTCTGTGTTTATATTTAATAATGGAGTATAATAATAATGATAAGTAAATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               224-337, - strand, RNAz p=0.928244

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               224-337, - strand, RNAz p=0.928244

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               76-364, gnl|bosTau2|chr20 (2773408-2773699)
               

               
               76-364, gnl|canFam2|chr4 (43426813-43426606)
               

               
               76-364, gnl|hg17|chr5 (171376063-171376277)
               

               
               76-364, gnl|panTro1|chr4 (178644082-178644295)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-364, gnl|bosTau2|chr20 (2773408-2773699)
               

               
               76-364, gnl|canFam2|chr4 (43426813-43426606)
               

               
               76-364, gnl|hg17|chr5 (171376063-171376277)
               

               
               76-364, gnl|panTro1|chr4 (178644082-178644295)

	76-364, gnl\|bosTau2\|chr20 (2773408-2773699)
	76-364, gnl\|canFam2\|chr4 (43426813-43426606)
	76-364, gnl\|hg17\|chr5 (171376063-171376277)
	76-364, gnl\|panTro1\|chr4 (178644082-178644295)