Non-Coding RNA Search

Ova1-OVRM10187F08

Sequence:


               
               TATTACCTCCTGTTTAAACAGAGCTGTGGACGAGAGGTTCTAGGGCCTCTGTACCAAAGC
CAGAGTAAATTTATGGCAGAGGCTCCATCCGGGAGTGTGTTTCCCGCACCTTTAAAGCAA
ATGGAGTCTGAGGTGCTACAGCTGAGAGCCACGGTCCTGGGAGGTCACTCTCTGAGGACA
GGGTAGGACAGATGAGTGACCCTGCACTGCCCCGTTGTGTGGAGTGTTCTTTATAAAGTC
TCTTTATAAAGTCTCTTTGAGGCAGAGGCTTTTGTCTTTGAGTCCCTCTTGGGAATGCGC
CAAGCTCTTAAGGCCACCTGTGCCCTGGGCAGCACAACAGCCATATACCCTGGTATAGAT
GCACATTTCAAAATGCATCAAGATCAAACATAGTTCCAGAACTTCTAACAAAATCTGTAC
ACTGATTTGGGTCCGGCTGCCTTTGTATTATGAAGGTATGCCTCAATGCATAGAAAAGAG
ACCTCGGGCAAGCAAACTTACCTTCAAATAGAAACAGTGAACTAGAGAACACAAAAGCCA
TTCTGGAGAGTTCCTGGAGagtgggttaaagatctggcctcatcactgcaggggcccaca
tcgcaaccgtggcacaggtttaatccctggcctgggaacttccatatgccatgggcatgg
ACCAAAAAAAAAAACATTCTGAATAGTGGAGGTGAGTATTGACTGCNTAAAGCTTGGTCA
GCTCTACCCCCATAGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTACCTCCTGTTTAAACAGAGCTGTGGACGAGAGGTTCTAGGGCCTCTGTACCAAAGC
CAGAGTAAATTTATGGCAGAGGCTCCATCCGGGAGTGTGTTTCCCGCACCTTTAAAGCAA
ATGGAGTCTGAGGTGCTACAGCTGAGAGCCACGGTCCTGGGAGGTCACTCTCTGAGGACA
GGGTAGGACAGATGAGTGACCCTGCACTGCCCCGTTGTGTGGAGTGTTCTTTATAAAGTC
TCTTTATAAAGTCTCTTTGAGGCAGAGGCTTTTGTCTTTGAGTCCCTCTTGGGAATGCGC
CAAGCTCTTAAGGCCACCTGTGCCCTGGGCAGCACAACAGCCATATACCCTGGTATAGAT
GCACATTTCAAAATGCATCAAGATCAAACATAGTTCCAGAACTTCTAACAAAATCTGTAC
ACTGATTTGGGTCCGGCTGCCTTTGTATTATGAAGGTATGCCTCAATGCATAGAAAAGAG
ACCTCGGGCAAGCAAACTTACCTTCAAATAGAAACAGTGAACTAGAGAACACAAAAGCCA
TTCTGGAGAGTTCCTGGAGagtgggttaaagatctggcctcatcactgcaggggcccaca
tcgcaaccgtggcacaggtttaatccctggcctgggaacttccatatgccatgggcatgg
ACCAAAAAAAAAAACATTCTGAATAGTGGAGGTGAGTATTGACTGCNTAAAGCTTGGTCA
GCTCTACCCCCATAGTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-120, + strand, RNAz p=0.837327

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, + strand, RNAz p=0.837327

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-551, gnl|bosTau2|chr1 (41097570-41098096)
               

               
               2-551, gnl|Hg17|chr3 (120563477-120564335)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-551, gnl|bosTau2|chr1 (41097570-41098096)
               

               
               2-551, gnl|Hg17|chr3 (120563477-120564335)

	2-551, gnl\|bosTau2\|chr1 (41097570-41098096)
	2-551, gnl\|Hg17\|chr3 (120563477-120564335)