Non-Coding RNA Search

Ova1-OVRM10188D05

Sequence:


               
               TGCCATGACAAGCATTTTCTTAAGAAAGCTCTGCTGTTGAGACCGTCTGAAGCGGGGGGT
TGAAGGGGGGGGCACGAACTTCCTGGGGAACGGTCTCCCCGAGGAGGGCAAGCCCAGAGA
CACCCGCCCAGCTCCCAGCACCCTTTTCTTCCAGGAACCTGAGAGGTCCTTTCCTTTGGG
AGGGCTAGGGGAGGAGACCCAGCCCACTCCCCGGTCGTAGCTGGAAAGGCAGGAGAGACC
AGCCAGCATCTCCGGCGTGGTTGCCACACGGGGGACACCGGTGGGTCGTCACCCCCCCCA
CCTCTGTCCATGGAAACCCGCAGAAAGAGTCCCGCGTGGAGAAACCTGGATCTCTGCTAG
AAAGAAAGGTAGGTTTGCAGAGAATGAATTGAATCTTGATTTGCAAACTTAGTTTCTTTC
TTTCCTTTCAGTGGCTGATAAAATTCTCTGAATTTCCTCTTCCTAGCATATTTCTTGCAA
CTGGGTTTAAGGGTGTGTGTGTCTGTGTGTGTGTGCGCTCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCATGACAAGCATTTTCTTAAGAAAGCTCTGCTGTTGAGACCGTCTGAAGCGGGGGGT
TGAAGGGGGGGGCACGAACTTCCTGGGGAACGGTCTCCCCGAGGAGGGCAAGCCCAGAGA
CACCCGCCCAGCTCCCAGCACCCTTTTCTTCCAGGAACCTGAGAGGTCCTTTCCTTTGGG
AGGGCTAGGGGAGGAGACCCAGCCCACTCCCCGGTCGTAGCTGGAAAGGCAGGAGAGACC
AGCCAGCATCTCCGGCGTGGTTGCCACACGGGGGACACCGGTGGGTCGTCACCCCCCCCA
CCTCTGTCCATGGAAACCCGCAGAAAGAGTCCCGCGTGGAGAAACCTGGATCTCTGCTAG
AAAGAAAGGTAGGTTTGCAGAGAATGAATTGAATCTTGATTTGCAAACTTAGTTTCTTTC
TTTCCTTTCAGTGGCTGATAAAATTCTCTGAATTTCCTCTTCCTAGCATATTTCTTGCAA
CTGGGTTTAAGGGTGTGTGTGTCTGTGTGTGTGTGCGCTCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               355-473, + strand, RNAz p=0.702265

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               355-473, + strand, RNAz p=0.702265

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001684, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001684, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-516, gnl|bosTau2|chr16 (2792125-2792636)
               

               
               1-516, gnl|Hg17|chr1 (200327634-200328155)
               

               
               1-516, gnl|Mm7|chr1 (133690775-133690255)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr16 (2792125-2792636)
               

               
               1-516, gnl|Hg17|chr1 (200327634-200328155)
               

               
               1-516, gnl|Mm7|chr1 (133690775-133690255)

	1-516, gnl\|bosTau2\|chr16 (2792125-2792636)
	1-516, gnl\|Hg17\|chr1 (200327634-200328155)
	1-516, gnl\|Mm7\|chr1 (133690775-133690255)